View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2024R-Insertion-3 (Length: 342)

Name: NF2024R-Insertion-3
Description: NF2024R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2024R-Insertion-3
NF2024R-Insertion-3
[»] scaffold0386 (1 HSPs)
scaffold0386 (8-314)||(901-1207)
[»] chr4 (2 HSPs)
chr4 (8-314)||(33878746-33879052)
chr4 (229-268)||(46673679-46673718)
[»] chr5 (3 HSPs)
chr5 (33-314)||(13869366-13869647)
chr5 (185-309)||(27641005-27641129)
chr5 (8-132)||(27641144-27641268)
[»] chr7 (2 HSPs)
chr7 (8-314)||(29735328-29735634)
chr7 (231-268)||(8720808-8720845)
[»] chr3 (1 HSPs)
chr3 (33-309)||(49851072-49851337)
[»] chr8 (3 HSPs)
chr8 (165-314)||(38460553-38460702)
chr8 (69-118)||(38460700-38460749)
chr8 (229-268)||(44428119-44428158)


Alignment Details
Target: scaffold0386 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 901 - 1207
Alignment:
Q  8 aacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaa 107  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  901 aacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaa 1000  T
Q  108 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1001 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatt 1100  T
Q  208 tggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttttagaattattcc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1101 tggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattcc 1200  T
Q  308 acaggtt 314  Q
    |||||||    
T  1201 acaggtt 1207  T

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Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 314
Target Start/End: Complemental strand, 33879052 - 33878746
Alignment:
Q  8 aacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaa 107  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879052 aacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaa 33878953  T
Q  108 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33878952 gttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctccgcatgatt 33878853  T
Q  208 tggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttttagaattattcc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33878852 tggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttctagaattattcc 33878753  T
Q  308 acaggtt 314  Q
    |||||||    
T  33878752 acaggtt 33878746  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 46673718 - 46673679
Alignment:
Q  229 tgcaatgagtagtcgatgagccataaccatcttcacaatt 268  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  46673718 tgcaatgagtagtggatgagtcataaccatcttcacaatt 46673679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 33 - 314
Target Start/End: Complemental strand, 13869647 - 13869366
Alignment:
Q  33 cattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaata 132  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13869647 cattcagccaccatatctcaactcatggaagagaaaatttcaacctttcaagagatctgaatttccaaatgcaaagttattaaaactaactattttaata 13869548  T
Q  133 taatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgca 232  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  13869547 gaatttgacccattgctcgattggattgcaataacacccaatacagcatgatttagaaacaatctctacatgatttggatccgttaattatggtgttaca 13869448  T
Q  233 atgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccacaggtt 314  Q
    ||||| ||| |||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||    
T  13869447 atgagcagtggatgagacataaccatcttcataatttaaacaacaagagaagtttggcgtttctagaattattccaccggtt 13869366  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 27641129 - 27641005
Alignment:
Q  185 ttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaag 284  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||| ||||||||||||||||||||    
T  27641129 ttagaaacaatctctacatgatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaag 27641030  T
Q  285 tttggagtttttagaattattccac 309  Q
    ||||| |||| ||||||||||||||    
T  27641029 tttggcgtttctagaattattccac 27641005  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 27641268 - 27641144
Alignment:
Q  8 aacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaa 107  Q
    ||||||||||||||||||       |||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  27641268 aacatgttcatcaaccttaaaaaaacattcacccaccatatgtcaactcatggaagagaaaatttcaacctttcaagagatctgaatttccaaatgcaaa 27641169  T
Q  108 gttattaaaactaactattttaata 132  Q
    |||||||||||||||||||||||||    
T  27641168 gttattaaaactaactattttaata 27641144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 29735328 - 29735634
Alignment:
Q  8 aacatgttcatcaaccttnnnnnnncattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgca-- 105  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||      
T  29735328 aacatgttcatcaaccttaaaaaaacattcagccaccatatctcaactcatggaagagaaaatttcaaccttttaagagatctgaatttccaaatgcata 29735427  T
Q  106 ----aagttattaaaactaactattttaatataatttgacccattgctcgattggattgcaataacacccaatacagcatggtttagaaacaatctctgc 201  Q
        ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  29735428 caaaaagttattaaaactaactattttaatagaatttaacccattgctcgattggattgcaataacacccaatacagtatggtttagaaacaatctctac 29735527  T
Q  202 atgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttttagaat 301  Q
    |||||||||||||||||||||||||||||||||||      |||||| |||||||||||||||||||||||||||||||| | |||||  ||||||||||    
T  29735528 atgatttggatccgttaattatggtgttgcaatga------gatgagacataaccatcttcacaatttaaacaacaagaggaatttggcatttttagaat 29735621  T
Q  302 tattccacaggtt 314  Q
    |||||||| ||||    
T  29735622 tattccaccggtt 29735634  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 8720845 - 8720808
Alignment:
Q  231 caatgagtagtcgatgagccataaccatcttcacaatt 268  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  8720845 caatgagtagtggatgagacataaccatcttcacaatt 8720808  T

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Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 33 - 309
Target Start/End: Original strand, 49851072 - 49851337
Alignment:
Q  33 cattcagccaccatatctcaactcatggaagagaaaatttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaactaactattttaata 132  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49851072 cattcggccatcatatctcaactcatggaagagaaaatttcaaccttttaagagatctgaatttccaaatgcaaagttattaaaactaactattttaata 49851171  T
Q  133 taatttgacccattgctcgattggattgc---aataacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgtt 229  Q
     ||||||||||||||||| ||||||||||   ||||||||||||||||||||| |||||||||||||||| ||              |||||||||||||    
T  49851172 gaatttgacccattgctcaattggattgcaataataacacccaatacagcatgatttagaaacaatctctaca--------------taattatggtgtt 49851257  T
Q  230 gcaatgagtagtcgatgagccataaccatcttcacaatttaaacaacaagagaagtttggagtttttagaattattccac 309  Q
     |||| || ||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  49851258 acaataagcagtggatgagacataaccatcttcacaatttaaacaacaagggaagtttggcgtttctagaattattccac 49851337  T

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Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 165 - 314
Target Start/End: Complemental strand, 38460702 - 38460553
Alignment:
Q  165 aacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatcttcac 264  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||    
T  38460702 aacacccaatacaacatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagcagtggatgagacataaccatcttcac 38460603  T
Q  265 aatttaaacaacaagagaagtttggagtttttagaattattccacaggtt 314  Q
    ||||||||||||||||||  |||||||||| |||| ||||||||||||||    
T  38460602 aatttaaacaacaagagatatttggagtttctagacttattccacaggtt 38460553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 38460749 - 38460700
Alignment:
Q  69 atttcaacatttcaagagatttgaatttccaaatgcaaagttattaaaac 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38460749 atttcaacctttcaagagatttgaatttccaaatgcaaagttattaaaac 38460700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 44428119 - 44428158
Alignment:
Q  229 tgcaatgagtagtcgatgagccataaccatcttcacaatt 268  Q
    ||||||||||||| |||||| |||||||||||||||||||    
T  44428119 tgcaatgagtagtggatgagacataaccatcttcacaatt 44428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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