View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2024R-Insertion-4 (Length: 336)
Name: NF2024R-Insertion-4
Description: NF2024R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024R-Insertion-4 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0316 (1 HSPs) |
| | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 11819657 - 11819986
Alignment:
| Q |
9 |
ataataaattacgaagatattttgtaggctctgcttaatgaaacagtctatattacgccatctatttaataatttatcggttttatcggtctgttcttaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
11819657 |
ataataaattacgaagatattttgtaggctcttcttaatgaaacagtctatattacgccatctatttaataatttatcggttttattggtctggtcttaa |
11819756 |
T |
|
| Q |
109 |
atcagttttgctcccaaaacaccaatctggcaaaagatggaggatcagtcttaaatcagcctataatcagttttaatggcaaggtccaaagatggagaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11819757 |
atcagttttgctcccaaaacaccaatctggcaaaagatggaggatcagtcttaaatcagccttaaatcagttttaatggcaaggtccaaagatagagaat |
11819856 |
T |
|
| Q |
209 |
cattatgaggaaaaggaaacgtg-------nnnnnnnnnngtttaataatatggctcgatataagttataaaatattaacaaaaacatnnnnnnnctata |
301 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11819857 |
cattatgagcaaaaggaaacatgttttttttttttgttttgtttaataatatggctcgatataagttataaaatattaacaaaaacat-aaaaaactata |
11819955 |
T |
|
| Q |
302 |
acgtaaatctttatatttatttcttgttaat |
332 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |
|
|
| T |
11819956 |
atgtaaatctttatatttatttcttgttaat |
11819986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 192110 - 192428
Alignment:
| Q |
9 |
ataataaattacgaagatattttgtaggctctgcttaatgaaacagtctatattacgccatctatttaataatttatcggttttatcggtctgttcttaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
192110 |
ataataaattacgaagatattttgtaggctctgcttaatgaaacagtctatattacgccatctatttaataatttgtcggttttatcggtctggtcttaa |
192209 |
T |
|
| Q |
109 |
atcagttttgctcccaaaacaccaatctggcaaaagatggaggatcagtcttaaatcagcctataatcagttttaatggcaaggtccaaagatggagaat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
192210 |
atcagttttgctcccaaaacaccaatctggcaaaagatggaggatcagtctta-----------aatcagttttaatggcaaggtccaaagatggagaat |
192298 |
T |
|
| Q |
209 |
cattatgaggaaaaggaaacgtg-------nnnnnnnnnngtttaataatatggctcgatataagttataaaatattaacaaaaacatnnnnnnnctata |
301 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
192299 |
cattatgagcaaaaggaaacatgttttttttttgttttttgtttaataatatggctcgatataagttatcaaatattaacaaaaacat-aaaaaactata |
192397 |
T |
|
| Q |
302 |
acgtaaatctttatatttatttcttgttaat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
192398 |
acgtaaatctttatatttatttcttgttaat |
192428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 7355 - 7418
Alignment:
| Q |
9 |
ataataaattacgaagatattttgtaggct-ctgcttaatgaaacagtctatattacgccatct |
71 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||| |||||| |
|
|
| T |
7355 |
ataataaattacgaagatattttgaagacttctgcttaatgaaacggtctatattactccatct |
7418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 11973598 - 11973535
Alignment:
| Q |
9 |
ataataaattacgaagatattttgtaggct-ctgcttaatgaaacagtctatattacgccatct |
71 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||||||||| ||||||||||| |||||| |
|
|
| T |
11973598 |
ataataaattacgaagatattttgaagacttctgcttaatgaaacggtctatattactccatct |
11973535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 3566409 - 3566353
Alignment:
| Q |
9 |
ataataaattacgaagatattttgtaggc-tctgcttaatgaaacagtctatattac |
64 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
3566409 |
ataataaattatgaagatattttgtagacttctgcttaatgaaatggtctatattac |
3566353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 26456 - 26423
Alignment:
| Q |
37 |
ctctgcttaatgaaacagtctatattacgccatc |
70 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
26456 |
ctctgcttaatgaaacagtctatattactccatc |
26423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University