View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2024R-Insertion-5 (Length: 322)

Name: NF2024R-Insertion-5
Description: NF2024R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2024R-Insertion-5
NF2024R-Insertion-5
[»] scaffold0076 (2 HSPs)
scaffold0076 (9-218)||(47786-47994)
scaffold0076 (214-322)||(47626-47734)
[»] chr4 (2 HSPs)
chr4 (9-179)||(12325718-12325888)
chr4 (214-322)||(12325448-12325553)
[»] chr8 (5 HSPs)
chr8 (9-218)||(20133876-20134080)
chr8 (214-322)||(20134132-20134240)
chr8 (9-158)||(14674569-14674715)
chr8 (17-158)||(31710199-31710337)
chr8 (80-158)||(18974406-18974484)
[»] chr7 (3 HSPs)
chr7 (9-218)||(44357991-44358195)
chr7 (214-322)||(44357831-44357939)
chr7 (80-149)||(5331388-5331457)
[»] chr5 (1 HSPs)
chr5 (9-159)||(11203439-11203586)
[»] chr6 (1 HSPs)
chr6 (9-158)||(4281543-4281689)
[»] chr3 (2 HSPs)
chr3 (80-158)||(19807201-19807279)
chr3 (17-95)||(17594762-17594840)
[»] chr2 (1 HSPs)
chr2 (9-158)||(8165833-8165976)
[»] scaffold0208 (1 HSPs)
scaffold0208 (26-58)||(351-383)


Alignment Details
Target: scaffold0076 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 47994 - 47786
Alignment:
Q  9 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaaatacaatatccttgctgtagtagtagtaat 108  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  47994 aaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatactcttgctgtagtagtagtaat 47895  T
Q  109 agaatcaaggattaaagtccaacctattgtctccagaatattaattatcactctatcacagtgcctatatcgcataaaacgataaacaaaaagtattgta 208  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||  ||||||||||||||||    
T  47894 agaatcaaggatgaaagtccaatctattgtctccagaatattaattatcactctatcacagtgcatatatcgcat-aaacgacgaacaaaaagtattgta 47796  T
Q  209 atagcagaaa 218  Q
    ||||||||||    
T  47795 atagcagaaa 47786  T

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Target: scaffold0076; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 214 - 322
Target Start/End: Complemental strand, 47734 - 47626
Alignment:
Q  214 agaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcgatgttggcaaagttc 313  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  47734 agaaaggtaccacctgacacgatatcatgacttctgtgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagttc 47635  T
Q  314 ggaatattg 322  Q
    |||||||||    
T  47634 ggaatattg 47626  T

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Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 179
Target Start/End: Complemental strand, 12325888 - 12325718
Alignment:
Q  9 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaaatacaatatccttgctgtagtagtagtaat 108  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  12325888 aaccgggttgatgtaggtgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaatacccttgctgtagtagtagtaat 12325789  T
Q  109 agaatcaaggattaaagtccaacctattgtctccagaatattaattatcactctatcacagtgcctatatc 179  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||    
T  12325788 agaatcaaggatgaaagtccaatctattgtctccagaatattaattatcaccctatcacagtgcatatatc 12325718  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 214 - 322
Target Start/End: Complemental strand, 12325553 - 12325448
Alignment:
Q  214 agaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcgatgttggcaaagttc 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||   ||||||| ||||||    
T  12325553 agaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggctgcctatcttcctcggcgg---tgttggcgaagttc 12325457  T
Q  314 ggaatattg 322  Q
    |||||||||    
T  12325456 ggaatattg 12325448  T

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Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 20133876 - 20134080
Alignment:
Q  9 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaaatacaatatccttgct---gtagtagtagt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||   |||||||||||    
T  20133876 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggtcctgaaaattacttaggaagtacaataccctggctgtagtagtagtagt 20133975  T
Q  106 aatagaatcaaggattaaagtccaacctattgtctccagaatattaattatcactctatcacagtgcctatatcgcataaaacgataaacaaaaagtatt 205  Q
    ||||||||||||||| |||||||||       |||| |||||||||||||||||||||||||||||| |||||||||| ||||||  |||||||||||||    
T  20133976 aatagaatcaaggatgaaagtccaa-------tctctagaatattaattatcactctatcacagtgcatatatcgcat-aaacgacgaacaaaaagtatt 20134067  T
Q  206 gtaatagcagaaa 218  Q
    |||||||||||||    
T  20134068 gtaatagcagaaa 20134080  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 214 - 322
Target Start/End: Original strand, 20134132 - 20134240
Alignment:
Q  214 agaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcgatgttggcaaagttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  20134132 agaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagttc 20134231  T
Q  314 ggaatattg 322  Q
    |||||||||    
T  20134232 ggaatattg 20134240  T

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Target: chr8; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 14674715 - 14674569
Alignment:
Q  9 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaaatacaatatccttgctgtagtagtagtaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| || | |     
T  14674715 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacaaccttgctgtagtattaatga- 14674617  T
Q  109 agaatcaaggattaaagtccaacctattgtctccagaatattaattatca 158  Q
      ||||| |||| || ||||||||||||||||||| ||||| ||||||||    
T  14674616 --aatcagggatgaatgtccaacctattgtctccaaaatatcaattatca 14674569  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 31710337 - 31710199
Alignment:
Q  17 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaaatacaatatccttgctgtagtagtagtaatagaatcaa 116  Q
    ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| || | |   |||||     
T  31710337 tgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacttaggaagtacaacacccttgctgtagtattaatga---aatcag 31710241  T
Q  117 ggattaaagtccaacctattgtctccagaatattaattatca 158  Q
    |||| || ||||||||||||||||||| ||||| ||||||||    
T  31710240 ggatgaaggtccaacctattgtctccaaaatatcaattatca 31710199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 18974484 - 18974406
Alignment:
Q  80 tacaatatccttgctgtagtagtagtaatagaatcaaggattaaagtccaacctattgtctccagaatattaattatca 158  Q
    ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||  |||||||    
T  18974484 tacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatca 18974406  T

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Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 44358195 - 44357991
Alignment:
Q  9 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaaatacaatatccttgctgtagtagt---agt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||   |||    
T  44358195 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggtcctgaaaattacttaggaagtacaataccctggctgtagtagtagtagt 44358096  T
Q  106 aatagaatcaaggattaaagtccaacctattgtctccagaatattaattatcactctatcacagtgcctatatcgcataaaacgataaacaaaaagtatt 205  Q
    ||||||||||||||| |||||||||       |||| |||||||||||||||||||||||||||||| |||||||||| ||||||  |||||||||||||    
T  44358095 aatagaatcaaggatgaaagtccaa-------tctctagaatattaattatcactctatcacagtgcatatatcgcat-aaacgacgaacaaaaagtatt 44358004  T
Q  206 gtaatagcagaaa 218  Q
    |||||||||||||    
T  44358003 gtaatagcagaaa 44357991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 214 - 322
Target Start/End: Complemental strand, 44357939 - 44357831
Alignment:
Q  214 agaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcgatgttggcaaagttc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  44357939 agaaaggtaccacctgacacgatatcatgacttctgcgatgtttaggtggtcatacgtctaggccgcctatattcctcggcggcggtgttggcgaagttc 44357840  T
Q  314 ggaatattg 322  Q
    |||||||||    
T  44357839 ggaatattg 44357831  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 5331388 - 5331457
Alignment:
Q  80 tacaatatccttgctgtagtagtagtaatagaatcaaggattaaagtccaacctattgtctccagaatat 149  Q
    ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  5331388 tacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatat 5331457  T

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Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 11203586 - 11203439
Alignment:
Q  9 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaaatacaatatccttgctgtagtagtagtaat 108  Q
    ||||||||||||||||| ||||| |||||||  ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||   ||||||    
T  11203586 aaccgggttgatgtaggggagaagttgagttcatttgttgaatcttgaggccctgaaaattacttaggaagtacaatacctttgctgtagt---agtaat 11203490  T
Q  109 agaatcaaggattaaagtccaacctattgtctccagaatattaattatcac 159  Q
      |||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  11203489 gaaatcaaggatgaaagtccaatctattgtctccagaatagtaattatcac 11203439  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 4281543 - 4281689
Alignment:
Q  9 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaaatacaatatccttgctgtagtagtagtaat 108  Q
    ||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||| || | |     
T  4281543 aaccgggctgatggagatgagaaattgagttcgtttgttgaatcttgaggccctgaaaattacgtaggaagtacaacacccttgctgtagtattaatga- 4281641  T
Q  109 agaatcaaggattaaagtccaacctattgtctccagaatattaattatca 158  Q
      ||||| |||| || ||||||||||||||||||| |||||  |||||||    
T  4281642 --aatcagggatgaaggtccaacctattgtctccaaaatatccattatca 4281689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 158
Target Start/End: Original strand, 19807201 - 19807279
Alignment:
Q  80 tacaatatccttgctgtagtagtagtaatagaatcaaggattaaagtccaacctattgtctccagaatattaattatca 158  Q
    ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||  |||||||    
T  19807201 tacaatacccgtgctgtagtagtagtaatagaatcaaggatgaaagtccaacctattgtctccaaaatatccattatca 19807279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 17594840 - 17594762
Alignment:
Q  17 tgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaaatacaatatccttgctg 95  Q
    ||||| || |||||||||||||| |||||||||||||||||| ||||||||||||||||||| || || | ||||||||    
T  17594840 tgatggagatgagaaattgagttcgtttgttgaatcttgaggacctgaaaattacttaggaagtataacacccttgctg 17594762  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 8165976 - 8165833
Alignment:
Q  9 aaccgggttgatgtaggtgagaaattgagtttgtttgttgaatcttgaggccctgaaaattacttaggaaatacaatatccttgctgtagtagtagtaat 108  Q
    |||||||||| || |  ||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||   ||||      || ||| ||||    
T  8165976 aaccgggttgttggaaatgagaaattgagttcattcgttgaatcttgaggccctgaaaattacttaggaaatacaacgccctt------gtggtattaat 8165883  T
Q  109 agaatcaaggattaaagtccaacctattgtctccagaatattaattatca 158  Q
      ||||||| || || ||||||||||||||||||| ||||| ||||||||    
T  8165882 gaaatcaagaatgaaggtccaacctattgtctccaaaatatcaattatca 8165833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 351 - 383
Alignment:
Q  26 tgagaaattgagtttgtttgttgaatcttgagg 58  Q
    |||||||||||||||||||||||||||||||||    
T  351 tgagaaattgagtttgtttgttgaatcttgagg 383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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