View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2024R-Insertion-6 (Length: 292)

Name: NF2024R-Insertion-6
Description: NF2024R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2024R-Insertion-6
NF2024R-Insertion-6
[»] chr8 (1 HSPs)
chr8 (8-292)||(40603235-40603519)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 40603235 - 40603519
Alignment:
Q  8 aattaataagtgatttattcagtcaagtgtttcaaactcatcatcatcaaattcaaatagtacatgtttggtgtatatgtcgaaatcactttagcacaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40603235 aattaataagtgatttattcagtcaagtgtttcaaactcatcatcatcaaattcaaatagtacatttttggtgtatatgtcgaaatcactttagcacaat 40603334  T
Q  108 gtgatttttctacatcgacggtcaatccaaagatatacttaaagtcgttgcctatatggaaatgtgacatggaatgatggtgatagagaaaataacactg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40603335 gtgatttttctacatcgacggtcaatccaaagatatacttaaagtcgttgcctatatggaaatgtgacatggaatgatggtgatagagaaaataacactg 40603434  T
Q  208 aaaaggaaaggcaatgagattgaaagagttgggtgtgactaacctgtactcgtgaaaaaatcctgattccatgttcctataatgg 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40603435 aaaaggaaaggcaatgagattgaaagagttgggtgtgactaacctgtactcgtgaaaaaattctgattccatgttcctataatgg 40603519  T

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