View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_high_12 (Length: 289)
Name: NF2024_high_12
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_high_12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 4152944 - 4152672
Alignment:
| Q |
13 |
aatataaaaaatgaaaacatatatatacctgacaatcaaaagtgccatcaggtttaatcccagcatttccccaaggaaccattctaagatccacaatgga |
112 |
Q |
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| T |
4152944 |
aatataaaaaatgaaaacatata----cctgacaatcaaaagtgccatcaggtttaatcccagcatttccccaaggaaccattctaagatccacaatgga |
4152849 |
T |
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| Q |
113 |
aatgagaccagtttggaagagccttacaagatcgttcactataaaatcagcacaaaaaggacatagactttcatagtagattgacatggttactttcttg |
212 |
Q |
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| T |
4152848 |
aatgagaccagtttggaagagccttacaagatcgttcactataaaatcagcacaaaaaggacatagactttcatagtagattgacatggttactttcttg |
4152749 |
T |
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| Q |
213 |
tcataattagaggaagatgaagaagaagaaggtgctactaagagcaatagcaaaagcaaaagtggaagaaggaggaa |
289 |
Q |
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| T |
4152748 |
tcataattagaggaagatgaagaagaagaaggtgctactaagagcaatagcaaaagcaaaagtggaagaaggaggaa |
4152672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 36 - 267
Target Start/End: Complemental strand, 4160125 - 4159894
Alignment:
| Q |
36 |
tatacctgacaatcaaaagtgccatcaggtttaatcccagcatttccccaaggaaccattctaagatccacaatggaaatgagaccagtttggaagagcc |
135 |
Q |
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| T |
4160125 |
tatacctgacaaacaaaagtgccattagttgcaatcctagcatttccccaagggaccattttaagattcacaattgaaatgagattggtttgaaagagct |
4160026 |
T |
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| Q |
136 |
ttacaagatcgttcactataaaatcagcacaaaaaggacatagactttcatagtagattgacatggttactttcttgtcataattagaggaagatgaaga |
235 |
Q |
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| T |
4160025 |
tcacaagatggttcactatgaaatcagcagaataagggcatagactttcatagtagattgacatggttactttcttctcatttttagaggaagttgatga |
4159926 |
T |
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| Q |
236 |
agaagaaggtgctactaagagcaatagcaaaa |
267 |
Q |
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| T |
4159925 |
agaagaaggtgctactaatagcaatagcaaaa |
4159894 |
T |
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