View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_high_21 (Length: 227)
Name: NF2024_high_21
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 2 - 204
Target Start/End: Original strand, 42468448 - 42468651
Alignment:
| Q |
2 |
ttaagatctttaaatagtcaacttttaagaaggtttgtatattaattatgttaaaaattaaaatatttgactttgttgtagaatagatttttatttaaaa |
101 |
Q |
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| T |
42468448 |
ttaagatctttaaatagtcaacttttaagaaggtttgtatactaattatgttaaaaattaaaatatttgactttgttgtagaatagatttttatttaaaa |
42468547 |
T |
|
| Q |
102 |
ttcttttaagagtattatgttagaaacacaagttagca--nnnnnnnnnnnnnnnaaagattgtcatgttaagtagtgttttaaatgtattttttaaaga |
199 |
Q |
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| T |
42468548 |
ttc-tttaagagtattatgttagaaacacaagttagcaatatatatatatatataaaagattgtcatgttaagtagtgttttaaatgtattttttaaaga |
42468646 |
T |
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| Q |
200 |
atctt |
204 |
Q |
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||||| |
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| T |
42468647 |
atctt |
42468651 |
T |
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