View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_high_6 (Length: 461)
Name: NF2024_high_6
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Original strand, 40960306 - 40960749
Alignment:
| Q |
17 |
atctaaccaactaaacaaacaccactaaattacctaagcatacaatgtaaaccatttgtaaaagaggcaaggtggacccgaattcttccccaaaaacaaa |
116 |
Q |
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| T |
40960306 |
atctaaccaactaaacaaacaccactaaattacctaagcatacaatgtaaaccattcgtaaaagaggcaaggtggacccgaattcttccc-aaaaacaaa |
40960404 |
T |
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| Q |
117 |
ctccaagacaaactttttatcgcctctacaacctccggcactttagatgctttaaaaccgaagattttgtcgttccttgccttccaagtgttggatagaa |
216 |
Q |
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| T |
40960405 |
ctccaagacaaactttttatcgcctctacaacctccggcactttagatgctttaaaaccgaagattttgtcgttccttgccttccaagtgttggatagaa |
40960504 |
T |
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| Q |
217 |
gtagtaaaggaattgttggtacatcttaaaatgattcacatgttagataaatatctcagaatgcactttcagaaaactacttgtgtaccgcaaaaatgct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960505 |
gtagtaaaggaattgttggtacatcttaaaatgattcacatgttagataaatatctcagaatgcactttcagaaaactacttgtgtaccgcaaaaatgct |
40960604 |
T |
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| Q |
317 |
agatgttttcgaaagcctcctatgctgtttggtttttaactgatgcatatagcttcatgtaacttttgaaagattaatctggctgttgattccgtggttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40960605 |
agatgttttcgaaagcctcctatgctgtttggtttttaactgatgcatatagcttcatgtaacttttgaaagattaatctggctgttgattccgtggttg |
40960704 |
T |
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| Q |
417 |
tttactaaatatttggactccaggaaggtttgactgctgaggaat |
461 |
Q |
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| T |
40960705 |
tttactaaatatttggactccaggaaggtttgactgctgaggaat |
40960749 |
T |
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