View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_high_8 (Length: 351)
Name: NF2024_high_8
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 25538874 - 25538539
Alignment:
| Q |
1 |
aagtttgaaactttattcttctaatattctgcagagttttagaaataagtggtttttgtatgggactttgttgcatatatagtcatgatgccttataatg |
100 |
Q |
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| T |
25538874 |
aagtttgaaactttattcttctaatattctgcagagttttagaaataagtggtttttgtatgggactttgttgcatatatagtcatgatgccttataatg |
25538775 |
T |
|
| Q |
101 |
tgtctcattttttaaaattgagatgcctgatttaatgctttttctattcatgacctctcaatttcaatttcatgtatatgtactttgttgggaactttga |
200 |
Q |
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| T |
25538774 |
tgtctcattttttaaaattgagatgcctgatttaatgctttttgtattcatgacctctcaatttcaatttcatgtatatgtactttgttgggaactttga |
25538675 |
T |
|
| Q |
201 |
ttctgtccaattgagatgccgtcatttctgccatgcaccgcgcaaaaagatacaacaaagctgttgaactcgctgattacttcaaccagtcaaaaattgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25538674 |
ttctgtccaattgagatgccgtcatttctgccatgcaccgcgcaaaaagatacaacaaagctgttgaactcgctgattacttcaaccagtcaaaaattgt |
25538575 |
T |
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| Q |
301 |
tagaaccgccacctcttataacttggtcatcaaggt |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25538574 |
tagaaccgccacctcttataacttggtcatcaaggt |
25538539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 25524100 - 25524023
Alignment:
| Q |
74 |
catatatagtcatgatgccttataatgtgtctcattttttaaaattgagatgcctgatttaatgctttttctattcatgacctctcaa |
161 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
25524100 |
catatataatcatgatgccttataatgtgtctcat-ttttaaaat---------tgatttaatgcttttgctattcatgacctctcaa |
25524023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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