View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_1 (Length: 619)
Name: NF2024_low_1
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 7 - 604
Target Start/End: Complemental strand, 43284187 - 43283592
Alignment:
| Q |
7 |
gtagcataggtaagtagtggttggagaatggctatctaaggcaagtgtaacacatgatgtaggttttgactcaattaaatgctcattttgatgaacttac |
106 |
Q |
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| T |
43284187 |
gtagtataggtaagtagtggttggagaatggctatctaaggcaagtgtaacacatgatgtaggttttgactcaattaaatgctcattttgatgaacttac |
43284088 |
T |
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| Q |
107 |
tcctagagtttgcttggataggggattgtagtgagttaatgtaatttcttggagtaattaaaatgcgttggataaaaaatcagtttttggttagtatatt |
206 |
Q |
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| T |
43284087 |
tcctagagtttgcttggataggggattgtagtgagttaatgtaatttcttggagtaattaaaatgcgttggataaaatatcagtttttggttaatatatt |
43283988 |
T |
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| Q |
207 |
taaagcatttctgaaatatctatcattttgtaaagaattttacacgtcgtgtaagctcttgagcttcattgactccgatacttttctttgcctttaattc |
306 |
Q |
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| T |
43283987 |
taaagcatttctgaaatatctatcatcttgtaaagaattttacacgtcgtgtaagctcttgagcttcattgactccgatacttttctttgcctttaattc |
43283888 |
T |
|
| Q |
307 |
tttgaggattttttctattgttgagatttttggtgaaagttagggaaatgaaaaaacgtagtttatttcattttagcttacctataagtgcaaaatagtg |
406 |
Q |
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| T |
43283887 |
tttgaggactttttctattgttgagatttttggtgaaagttagggaaatgaaaaaacgtagtttatttcattttcgcttacctataagtgcaaaatagtg |
43283788 |
T |
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| Q |
407 |
taatttcacgatgtttttctgataatgtgtgtcatttttcttctacccagcgtagtgttgtactgtatgaatgtgtaaggaaagtctgttgaattgaaac |
506 |
Q |
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| T |
43283787 |
gaatttcacgatgtttttctgataat--gtgtcatttttcttctacccagtgtagtgttgtactgtatgaatgtgtaaggaaagtctgttgaattgaaac |
43283690 |
T |
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| Q |
507 |
ttgattccnnnnnnnnnnnnnnnnngtcgttgttcaaacgaaataatcattgtttcttgtttgtaattttgtatgtgctttttaaaattgtcaaattt |
604 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43283689 |
ttgattcctttttcttttcctttttgtcgttgttcaaacgaaataatcattgtttcttgtttgtaattttgtatgtgctttttaaaattgtcaaattt |
43283592 |
T |
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