View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_10 (Length: 369)
Name: NF2024_low_10
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 2 - 355
Target Start/End: Original strand, 31024437 - 31024791
Alignment:
| Q |
2 |
gcatcaaaccatcgagtactcttacccacactgggattactaccacctatggtcgttatgccttcaaatccacatcctacataaacaacgttaaacttaa |
101 |
Q |
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| T |
31024437 |
gcatcaaaccatagagtactcttaccaacactgggattactaccaactaaagtcgataagccttcaaatccacatcctacataaacaacgttaaccttaa |
31024536 |
T |
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| Q |
102 |
atcatgttctaaatccagtaccaaaagataaa-caagttttgcttaaaacaaaacttgccatagctctaatctattaacatgcatgttcatttttggaat |
200 |
Q |
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|||||||||||||||| |||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31024537 |
ttcatgttctaaatccactaccaaaagataaaacaaattatgcttaaaacaaaacttgccatagctctaatctattaacatgcatgttcatttt-ggaat |
31024635 |
T |
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| Q |
201 |
aattttaaagaagttagttactaaggaaactagttcacttgcatgtgcattaattatacattgttatgttctaatttagtcaaacaagtatttgttta-t |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31024636 |
aattttaaagaagttagttactaaggaaactagttcacttgcatgtgcattaattatacattgttatgttctaatttagtcaaacaagtatttgtttatt |
31024735 |
T |
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| Q |
300 |
tttttaaggaatgatcttggagcaaaatcgttaaggagggaatcaatgaatgaagt |
355 |
Q |
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| T |
31024736 |
tttttaaggaatgatcttggagcaaaatcgttaaggagggaatcaatgaatgaagt |
31024791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 61 - 354
Target Start/End: Original strand, 31072399 - 31072687
Alignment:
| Q |
61 |
gccttcaaatccacatcctacataaacaacgttaaacttaaatcatgttctaaatccagtaccaaaagataaacaagttttgcttaaaacaaaacttgcc |
160 |
Q |
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| T |
31072399 |
gccttctaatctacatcctacgtaaacaaagttaaccttaa-tcatgttccaaatccactaccaaaagataaacaagttatgcttaaaataaaatttgca |
31072497 |
T |
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| Q |
161 |
atagctctaatctattaacatgcatgttcatttttggaataattttaaagaagttagttactaaggaaactagttcacttgcatgtgcattaattataca |
260 |
Q |
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| T |
31072498 |
atagct--aatctattaacatg----ttcatttt-ggaataactt-aaacaagttagttacggaggaaactagttcccttgcatgtgcattaattataca |
31072589 |
T |
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| Q |
261 |
ttgttatgtt---ctaatttagtcaaacaagtatttgtttattttttaaggaatgatcttggagcaaaatcgttaaggagggaatc-aatgaatgaag |
354 |
Q |
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| T |
31072590 |
ttattatgttgttctaccttggtcaaacatgcaatttttttatttttcaggaatgatcttggagcaaaatcctcaaggagggaatcaaatgaatgaag |
31072687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 31040265 - 31040321
Alignment:
| Q |
107 |
gttctaaatccagtaccaaaagataaacaagttttgcttaaaacaaaacttgccata |
163 |
Q |
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| T |
31040265 |
gttctaaatccacaatcaaaagataaacaagttttgcttacaataaaacctgccata |
31040321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 33559597 - 33559695
Alignment:
| Q |
80 |
acataaacaacgttaaacttaaatcatgttctaaatccagtaccaaaagataaacaagttttgcttaaaacaaaacttgccatagctctaatctattaac |
179 |
Q |
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|||| ||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||| |
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| T |
33559597 |
acattaacaaagttaaccttaaatcatgttctgtatccactaccaaaagataaacaagttatgcttaaaataaaatttgccatag--ctaatctattaac |
33559694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 354
Target Start/End: Original strand, 33559719 - 33559843
Alignment:
| Q |
226 |
gaaactagttcacttgcatgtgcattaattatacattgttatgttctaat---ttagtcaaacaagtatttgtttattttttaaggaatgatcttggagc |
322 |
Q |
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| T |
33559719 |
gaaactagttcacttgcatgtgcatta----tacgttattatgttgttatactttagtcaaacaattaatttttt---ttttcaggaatgatcttgaagc |
33559811 |
T |
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| Q |
323 |
aaaatcgttaaggagggaatcaatgaatgaag |
354 |
Q |
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||| || | ||||||||||||||||||||||| |
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| T |
33559812 |
aaattcctcaaggagggaatcaatgaatgaag |
33559843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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