View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2024_low_12 (Length: 342)

Name: NF2024_low_12
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2024_low_12
NF2024_low_12
[»] chr6 (22 HSPs)
chr6 (168-314)||(24154321-24154467)
chr6 (166-317)||(10163414-10163564)
chr6 (198-314)||(13003014-13003130)
chr6 (204-326)||(34992141-34992262)
chr6 (204-326)||(28712162-28712283)
chr6 (29-92)||(24154182-24154245)
chr6 (168-270)||(11744381-11744483)
chr6 (21-93)||(10163268-10163341)
chr6 (21-93)||(13002850-13002923)
chr6 (214-310)||(4031245-4031341)
chr6 (204-310)||(242233-242338)
chr6 (204-311)||(16142354-16142461)
chr6 (204-294)||(6038782-6038872)
chr6 (21-93)||(17352721-17352792)
chr6 (204-311)||(18713519-18713626)
chr6 (21-80)||(28712405-28712465)
chr6 (259-314)||(14767091-14767146)
chr6 (204-314)||(17296404-17296514)
chr6 (29-93)||(11744558-11744625)
chr6 (12-93)||(19723879-19723959)
chr6 (43-80)||(16143184-16143221)
chr6 (19-70)||(16793322-16793374)
[»] chr8 (31 HSPs)
chr8 (170-314)||(15341077-15341221)
chr8 (170-314)||(15430142-15430286)
chr8 (170-314)||(15521446-15521590)
chr8 (15-93)||(6017561-6017639)
chr8 (204-316)||(18847222-18847334)
chr8 (202-301)||(22455303-22455402)
chr8 (167-235)||(6017419-6017487)
chr8 (204-316)||(22450260-22450372)
chr8 (204-326)||(41652199-41652318)
chr8 (244-310)||(19709723-19709789)
chr8 (21-93)||(15340927-15341000)
chr8 (21-93)||(15429992-15430065)
chr8 (21-93)||(15521296-15521369)
chr8 (204-294)||(32351994-32352084)
chr8 (204-294)||(32368655-32368745)
chr8 (29-93)||(19709515-19709577)
chr8 (29-93)||(22450046-22450108)
chr8 (29-93)||(23355472-23355534)
chr8 (251-311)||(22713898-22713958)
chr8 (208-282)||(28862671-28862745)
chr8 (19-80)||(41652015-41652077)
chr8 (250-311)||(12669066-12669127)
chr8 (29-80)||(32352213-32352264)
chr8 (29-80)||(32368874-32368925)
chr8 (204-310)||(10600386-10600492)
chr8 (261-311)||(24681046-24681096)
chr8 (258-311)||(25094867-25094920)
chr8 (29-93)||(27123654-27123716)
chr8 (204-265)||(28291771-28291832)
chr8 (204-271)||(11030468-11030536)
chr8 (258-310)||(13110003-13110055)
[»] chr1 (14 HSPs)
chr1 (199-314)||(25018444-25018559)
chr1 (204-326)||(16083441-16083563)
chr1 (204-327)||(44787540-44787663)
chr1 (204-326)||(33379543-33379665)
chr1 (207-326)||(11821602-11821721)
chr1 (202-326)||(24633947-24634071)
chr1 (251-311)||(17615068-17615128)
chr1 (29-93)||(25018666-25018730)
chr1 (204-316)||(13966195-13966308)
chr1 (259-311)||(22608133-22608185)
chr1 (259-311)||(33102842-33102894)
chr1 (28-80)||(24633326-24633378)
chr1 (43-93)||(11821848-11821898)
chr1 (29-79)||(23455188-23455238)
[»] chr2 (21 HSPs)
chr2 (202-311)||(17162197-17162306)
chr2 (168-317)||(23388923-23389070)
chr2 (214-326)||(20515755-20515867)
chr2 (21-89)||(28760668-28760737)
chr2 (198-294)||(28760852-28760949)
chr2 (204-315)||(13370171-13370282)
chr2 (204-327)||(16467498-16467623)
chr2 (204-309)||(17636519-17636624)
chr2 (204-309)||(17676377-17676482)
chr2 (30-93)||(21498140-21498201)
chr2 (20-93)||(2482040-2482112)
chr2 (29-80)||(17636737-17636788)
chr2 (29-80)||(17676595-17676646)
chr2 (204-271)||(15438238-15438305)
chr2 (261-311)||(29891564-29891614)
chr2 (257-326)||(21498352-21498421)
chr2 (21-80)||(15438052-15438112)
chr2 (259-311)||(18929128-18929180)
chr2 (259-311)||(25520679-25520731)
chr2 (29-93)||(31404106-31404169)
chr2 (21-80)||(32890426-32890486)
[»] chr3 (19 HSPs)
chr3 (204-316)||(53589314-53589427)
chr3 (204-326)||(44451077-44451198)
chr3 (204-327)||(15987357-15987480)
chr3 (204-316)||(4022931-4023043)
chr3 (21-91)||(48896060-48896131)
chr3 (207-316)||(1744877-1744986)
chr3 (208-316)||(25466271-25466379)
chr3 (197-310)||(48895840-48895953)
chr3 (205-313)||(45280154-45280262)
chr3 (204-316)||(25320985-25321104)
chr3 (33-93)||(15987587-15987645)
chr3 (204-311)||(14132288-14132395)
chr3 (239-315)||(4026610-4026686)
chr3 (259-311)||(4765961-4766013)
chr3 (246-293)||(5495370-5495417)
chr3 (27-93)||(27717983-27718047)
chr3 (204-269)||(17132537-17132605)
chr3 (29-93)||(17439136-17439198)
chr3 (222-294)||(1085529-1085601)
[»] chr5 (17 HSPs)
chr5 (204-326)||(10235833-10235954)
chr5 (204-316)||(9422901-9423012)
chr5 (204-317)||(28619443-28619556)
chr5 (204-315)||(24364366-24364479)
chr5 (207-307)||(22987533-22987633)
chr5 (204-315)||(24308846-24308960)
chr5 (21-93)||(24663572-24663643)
chr5 (251-311)||(24878165-24878225)
chr5 (244-311)||(31533262-31533329)
chr5 (204-311)||(25667473-25667581)
chr5 (259-310)||(17167564-17167615)
chr5 (29-80)||(31533055-31533106)
chr5 (21-93)||(22987748-22987819)
chr5 (44-93)||(30985579-30985626)
chr5 (21-80)||(24309082-24309142)
chr5 (21-80)||(24364184-24364244)
chr5 (264-316)||(25951117-25951169)
[»] chr7 (13 HSPs)
chr7 (204-326)||(11994128-11994249)
chr7 (207-326)||(28036950-28037069)
chr7 (205-316)||(12468716-12468828)
chr7 (208-310)||(7524935-7525037)
chr7 (239-316)||(7948223-7948300)
chr7 (29-93)||(1545647-1545709)
chr7 (29-80)||(7524765-7524816)
chr7 (202-270)||(1545825-1545893)
chr7 (243-310)||(18046266-18046333)
chr7 (44-93)||(12468945-12468992)
chr7 (29-71)||(41131966-41132008)
chr7 (29-70)||(4978852-4978893)
chr7 (21-76)||(9022554-9022610)
[»] scaffold0003 (1 HSPs)
scaffold0003 (204-326)||(89551-89673)
[»] chr4 (10 HSPs)
chr4 (205-317)||(16288527-16288639)
chr4 (239-316)||(43851328-43851405)
chr4 (21-93)||(12424781-12424854)
chr4 (29-93)||(24924891-24924953)
chr4 (259-311)||(4732422-4732474)
chr4 (204-316)||(24924652-24924771)
chr4 (243-310)||(6337797-6337864)
chr4 (29-93)||(26654149-26654211)
chr4 (204-269)||(24476143-24476208)
chr4 (243-311)||(9354703-9354771)
[»] scaffold0431 (1 HSPs)
scaffold0431 (21-93)||(5121-5194)
[»] scaffold0039 (3 HSPs)
scaffold0039 (204-304)||(33440-33540)
scaffold0039 (21-80)||(48275-48335)
scaffold0039 (21-80)||(33266-33326)
[»] scaffold0167 (2 HSPs)
scaffold0167 (204-314)||(704-814)
scaffold0167 (29-80)||(10309-10360)
[»] scaffold0024 (2 HSPs)
scaffold0024 (15-80)||(38905-38971)
scaffold0024 (259-314)||(39168-39223)
[»] scaffold0142 (1 HSPs)
scaffold0142 (258-311)||(20349-20402)
[»] scaffold0337 (1 HSPs)
scaffold0337 (204-311)||(4356-4464)
[»] scaffold0002 (1 HSPs)
scaffold0002 (261-311)||(376452-376502)
[»] scaffold0320 (1 HSPs)
scaffold0320 (21-80)||(6424-6484)
[»] scaffold0040 (1 HSPs)
scaffold0040 (21-76)||(26926-26982)
[»] scaffold1102 (1 HSPs)
scaffold1102 (258-311)||(1172-1225)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 168 - 314
Target Start/End: Original strand, 24154321 - 24154467
Alignment:
Q  168 cgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaaca 267  Q
    ||||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||| |||||||||||||||||    
T  24154321 cgaaaaacttttactttcatacaaaaaaccgttgtattcataaagcaacctatgaatatgatgaacactcatgaattttctggaaaaagattgcacaaca 24154420  T
Q  268 tgtcccagggtttctggtttgatcctgtttgtaataatcaaaactag 314  Q
     |||| ||| ||| ||||||||||||  |||||||||||||||||||    
T  24154421 agtcctaggatttatggtttgatcctacttgtaataatcaaaactag 24154467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 166 - 317
Target Start/End: Original strand, 10163414 - 10163564
Alignment:
Q  166 gccgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaa 265  Q
    |||||||||| |||||||||||| |||| || ||| ||||||||||||| ||||||||||||||||| |||| || |||||||| ||| |||||||||||    
T  10163414 gccgaaagacgtttactttcatacaaaa-actgttttattcataaagcagcctatgaatatgatgaacactcatgaattttctggaaacagattgcacaa 10163512  T
Q  266 catgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtct 317  Q
    ||| ||  ||  ||||||||||||||||| ||||||||||||||||||||||    
T  10163513 catatcttagaatttctggtttgatcctgcttgtaataatcaaaactagtct 10163564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 13003014 - 13003130
Alignment:
Q  198 gttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgttt 297  Q
    |||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||||||||||||| |||| | | ||||||||||||| ||| ||    
T  13003014 gttgtattcataaagcaacctatgaatatgatgaacgctcaggtattttctgaaaaaagattgcacaacaggtcctaagatttctggtttgattctgctt 13003113  T
Q  298 gtaataatcaaaactag 314  Q
    |||||||||||||||||    
T  13003114 gtaataatcaaaactag 13003130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 34992262 - 34992141
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||||||||||||||||||| | || |||||||| || ||||| ||||||||| || ||| ||| |||||| |||||||||| ||||||||    
T  34992262 ttcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaatattgcacaatat-tcctaggatttctgatttgatcctgcttgtaata 34992164  T
Q  304 atcaaaactagtctggttgttta 326  Q
    || ||||||||||  ||||||||    
T  34992163 attaaaactagtcatgttgttta 34992141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 28712283 - 28712162
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||||||||||||| ||||| | || |  | ||| || |||||||||||||||||||||| ||| |||||||||||||| ||  |||||||    
T  28712283 ttcataaagcaacctatgaatattatgaacattcatacactttatggaaaaagattgcacaacatgtcctaggatttctggtttgatcttgcctgtaata 28712184  T
Q  304 atcaaaactagtctggttgttta 326  Q
    ||| |||||||||| ||||||||    
T  28712183 atc-aaactagtctcgttgttta 28712162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 24154182 - 24154245
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgc 92  Q
    ||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24154182 aaagagtcatacaaaatgtatgtaaactgatttgtcgaaccacctttacatttaaatgcaatgc 24154245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 270
Target Start/End: Complemental strand, 11744483 - 11744381
Alignment:
Q  168 cgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaaca 267  Q
    |||||||| |||||||||||| |||| ||||||||||||||||| |||||||| ||||||||||| |||   ||||||| |||||| |||| | ||||||    
T  11744483 cgaaagacttttactttcatacaaaaaaccgttgtattcataaaacaacctataaatatgatgaacactaaagtattttatgaaaagagatcgaacaaca 11744384  T
Q  268 tgt 270  Q
    |||    
T  11744383 tgt 11744381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 10163268 - 10163341
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||| ||||||||   ||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  10163268 gtctagagaaaagagtcatatagaatgtatgtaaactgatttgtcgaaccgcgtttacatttaaatgcaatgca 10163341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 13002850 - 13002923
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||| |||||||||  ||||||||||||||||||||||||||||| ||||| ||||||| |||||||    
T  13002850 gtctagagaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccacctttacgtttaaatacaatgca 13002923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 4031245 - 4031341
Alignment:
Q  214 aacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 310  Q
    ||||||||||||||||||| | ||| | | |||||  |||||||||||||||||||| | ||| |||||||||||||| || ||||| |||||||||    
T  4031245 aacctatgaatatgatgaacattcgagcactttctagaaaaagattgcacaacatgttctaggatttctggtttgatcatgcttgtagtaatcaaaa 4031341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 310
Target Start/End: Original strand, 242233 - 242338
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||| ||||||||||||||||||| | ||  | | |||||| ||||| |||||||||||||||| | || ||||||||||||| || ||||||||    
T  242233 ttcataaagtaacctatgaatatgatgaacattcaagcactttctggaaaaatattgcacaacatgtccta-ggattctggtttgatcttgcttgtaata 242331  T
Q  304 atcaaaa 310  Q
    | |||||    
T  242332 accaaaa 242338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 16142461 - 16142354
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    |||||||| |||||||||||| ||||||  ||||    | |||||| |||||  ||||||||||||||| ||| ||||| |||||||| |||||||||||    
T  16142461 ttcataaaccaacctatgaatctgatgaccactcactcactttctggaaaaactttgcacaacatgtcctaggatttctagtttgatcatgtttgtaata 16142362  T
Q  304 atcaaaac 311  Q
    | ||||||    
T  16142361 accaaaac 16142354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 6038872 - 6038782
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 294  Q
    |||||||||||| |||||||||||||||| | ||  | |||||||| ||||||||||||||| ||  || ||| ||||| |||||||||||    
T  6038872 ttcataaagcaaactatgaatatgatgaacattcaagcattttctggaaaaagattgcacaatattccctaggatttctagtttgatcctg 6038782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 17352792 - 17352721
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||| ||||||||| |||||  ||||| ||||||||||||||||||||||||||  |||||||||||    
T  17352792 gtctagagaaaagagtcatacataatgcttgtaatctgatttgtcgaaccacatttacatt--aatgcaatgca 17352721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 18713626 - 18713519
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcg---tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgta 300  Q
    |||||||||| |||||||||| |||||||  | ||   |||||||||| |||||  ||||| |||||||||| ||| |||||||||||||| || |||||    
T  18713626 ttcataaagctacctatgaatttgatgaa--cgcgaactgtattttcttaaaaac-attgcgcaacatgtccaaggatttctggtttgatcttgcttgta 18713530  T
Q  301 ataatcaaaac 311  Q
    |||||||||||    
T  18713529 ataatcaaaac 18713519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 28712465 - 28712405
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||| ||||||||  |||||||||||| ||||||||||||||||| ||||||||    
T  28712465 gtctagagaaaagagtcatatataatgtatgtaatctgatttgtcgaaccacctttacatt 28712405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 14767091 - 14767146
Alignment:
Q  259 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactag 314  Q
    |||||||||||||| ||  |||||||||||||| || |||||||||||||||||||    
T  14767091 tgcacaacatgtcctagaatttctggtttgatcgtgcttgtaataatcaaaactag 14767146  T

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Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 17296404 - 17296514
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||||| ||||| |||||||  |||    || ||||| |||||  |||||||||||||   ||| ||||| ||||||||||| ||||||||    
T  17296404 ttcataaagcaacctctgaatttgatgaacgctcactcatattctggaaaaaatttgcacaacatgttgtaggatttcttgtttgatcctgattgtaata 17296503  T
Q  304 atcaaaactag 314  Q
    | |||||||||    
T  17296504 accaaaactag 17296514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 11744625 - 11744558
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccac---atttacatttaaatgcaatgca 93  Q
    ||||||||||||  ||| ||| ||||||||||||| |||||||   ||||||||||||||||||||||    
T  11744625 aaagagtcatacagaatctatataaactgatttgttgaaccacctaatttacatttaaatgcaatgca 11744558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 19723879 - 19723959
Alignment:
Q  12 agaacctgtgtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    |||||| | ||||||||||| ||||||||| |||||||||||| ||||||||  |||| || ||||||||  |||||||||||    
T  19723879 agaaccggcgtctagagaaaagagtcatacataatgtatgtaatctgatttgatgaactacctttacatt--aatgcaatgca 19723959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 16143221 - 16143184
Alignment:
Q  43 aatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  16143221 aatgtatgtaatctgatttgtcgaaccacctttacatt 16143184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 16793374 - 16793322
Alignment:
Q  19 gtgtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaacca 70  Q
    ||||||||||||| |||||||||   |||||||||| ||||||||||||||||    
T  16793374 gtgtctagagaaaagagtcatacaatatgtatgtaatctgatttgtcgaacca 16793322  T

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Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 314
Target Start/End: Original strand, 15341077 - 15341221
Alignment:
Q  170 aaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 269  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||| |||    
T  15341077 aaagacatttactttcatacaaaatatcgttgtattcataaagcaacctatgaatatgatgaacactcatgtattttctggaaaatgattgcacaatatg 15341176  T
Q  270 tcccagggtttctggtttgatcctgtttgtaataatcaaaactag 314  Q
    ||  ||| ||| ||||||||||||  ||||||| |||||||||||    
T  15341177 tcataggatttttggtttgatcctacttgtaattatcaaaactag 15341221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 314
Target Start/End: Original strand, 15430142 - 15430286
Alignment:
Q  170 aaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 269  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||| |||    
T  15430142 aaagacatttactttcatacaaaatatcgttgtattcataaagcaacctatgaatatgatgaacactcatgtattttctggaaaatgattgcacaatatg 15430241  T
Q  270 tcccagggtttctggtttgatcctgtttgtaataatcaaaactag 314  Q
    ||  ||| ||| ||||||||||||  ||||||| |||||||||||    
T  15430242 tcataggatttttggtttgatcctacttgtaattatcaaaactag 15430286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 314
Target Start/End: Original strand, 15521446 - 15521590
Alignment:
Q  170 aaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 269  Q
    ||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||||||| |||    
T  15521446 aaagacatttactttcatacaaaatatcgttgtattcataaagcaacctatgaatatgatgaacactcatgtattttctggaaaatgattgcacaatatg 15521545  T
Q  270 tcccagggtttctggtttgatcctgtttgtaataatcaaaactag 314  Q
    ||  ||| ||| ||||||||||||  ||||||| |||||||||||    
T  15521546 tcataggatttttggtttgatcctacttgtaattatcaaaactag 15521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 6017639 - 6017561
Alignment:
Q  15 acctgtgtctagagaaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6017639 acctgcgtctagagaaagagtcatacataatgtatgtaaactgatttgtcgaactacatttacatttaaatgcaatgca 6017561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 18847334 - 18847222
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    |||||||||||||||||||||||  |||| | || |||||||| || |||||||||||||||||||||  ||| ||||| ||||||||||  ||||||||    
T  18847334 ttcataaagcaacctatgaatatattgaacattcatgtattttttggaaaaagattgcacaacatgtcataggatttctagtttgatccttcttgtaata 18847235  T
Q  304 atcaaaactagtc 316  Q
    |||||||||||||    
T  18847234 atcaaaactagtc 18847222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 301
Target Start/End: Original strand, 22455303 - 22455402
Alignment:
Q  202 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 301  Q
    ||||||||||||||||||||||||||||||| | || |||| ||| || |||||||||||||||||| ||| ||| ||||||||||||||||| ||||||    
T  22455303 tattcataaagcaacctatgaatatgatgaacattcatgtactttttggaaaaagattgcacaacatatcctaggatttctggtttgatcctgcttgtaa 22455402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 6017487 - 6017419
Alignment:
Q  167 ccgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatac 235  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||    
T  6017487 ccgaaagacatttactttcatataaaagatcgttgtattcataaagcaacctatgaatataataaatac 6017419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 22450260 - 22450372
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    |||||||| |||||||||||||||||||| | || |  | ||| || |||||||||||| |||||||| |||| ||| |||||||||| || ||||||||    
T  22450260 ttcataaaacaacctatgaatatgatgaagattcatacaatttttggaaaaagattgcataacatgtcacaggatttatggtttgatcttgcttgtaata 22450359  T
Q  304 atcaaaactagtc 316  Q
    |||||||||||||    
T  22450360 atcaaaactagtc 22450372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 41652199 - 41652318
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||||||||||||||||||| | ||    | |||||  |||||||||||||||  ||||  | | ||||||||||||||||| ||||||||    
T  41652199 ttcataaagcaacctatgaatatgatgaacattccac-actttcttgaaaaagattgcacaa--tgtcatatgatttctggtttgatcctgcttgtaata 41652295  T
Q  304 atcaaaactagtctggttgttta 326  Q
    |||||||||||||| ||||||||    
T  41652296 atcaaaactagtcttgttgttta 41652318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 244 - 310
Target Start/End: Original strand, 19709723 - 19709789
Alignment:
Q  244 tttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 310  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||| |||||||||||    
T  19709723 tttctgaaaaaagattgcacaacatgtcctaggatttatggtttgatcctgcttgcaataatcaaaa 19709789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 15340927 - 15341000
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||| |||||||||  |||||||||||||||||||||| |||||| ||||| || ||||||||||||    
T  15340927 gtctagagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccacctttacgttgaaatgcaatgca 15341000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 15429992 - 15430065
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||| |||||||||  |||||||||||||||||||||| |||||| ||||| || ||||||||||||    
T  15429992 gtctagagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccacctttacgttgaaatgcaatgca 15430065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 15521296 - 15521369
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||| |||||||||  |||||||||||||||||||||| |||||| ||||| || ||||||||||||    
T  15521296 gtctagagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccacctttacgttgaaatgcaatgca 15521369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 32352084 - 32351994
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 294  Q
    ||||||||  ||||||||||||||| ||| | || |||||||| |  ||||||||  |||||||||||| ||| |||||||||||||||||    
T  32352084 ttcataaattaacctatgaatatgacgaacattcatgtattttatagaaaaagatgtcacaacatgtcctaggatttctggtttgatcctg 32351994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 32368745 - 32368655
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 294  Q
    ||||||||  ||||||||||||||| ||| | || |||||||| |  ||||||||  |||||||||||| ||| |||||||||||||||||    
T  32368745 ttcataaattaacctatgaatatgacgaacattcatgtattttatagaaaaagatgtcacaacatgtcctaggatttctggtttgatcctg 32368655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 19709515 - 19709577
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    |||||||||||  ||||||||||||  |||||||||||||||||||||||||  |||||||||||    
T  19709515 aaagagtcatagataatgtatgtaatttgatttgtcgaaccacatttacatt--aatgcaatgca 19709577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 22450046 - 22450108
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||| |||||  |||||||||||    
T  22450046 aaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacattaacatt--aatgcaatgca 22450108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 23355534 - 23355472
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  23355534 aaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacatt--aatgcaatgca 23355472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 22713898 - 22713958
Alignment:
Q  251 aaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    ||||| ||| |||||||||| | ||||||||||||||||||||| |||||||||| |||||    
T  22713898 aaaaacatttcacaacatgttctagggtttctggtttgatcctgcttgtaataataaaaac 22713958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 28862671 - 28862745
Alignment:
Q  208 taaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttct 282  Q
    ||||| || |||||||||||||||| | || |||||||| ||||||| |||||||||||||| || ||| |||||    
T  28862671 taaagtaaactatgaatatgatgaacattcatgtattttgtgaaaaacgattgcacaacatgccctaggatttct 28862745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 41652015 - 41652077
Alignment:
Q  19 gtgtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||||| |||||||||  |||||||||||  |||||||||||||||| ||||||||    
T  41652015 gtgtctagagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccacctttacatt 41652077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 12669066 - 12669127
Alignment:
Q  250 aaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    ||||| || |||||||||||| | | | ||||||||||||||||| ||||||||||||||||    
T  12669066 aaaaacgaatgcacaacatgttctatgatttctggtttgatcctgcttgtaataatcaaaac 12669127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 32352264 - 32352213
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||||  |||||||||||  |||||||||||||||| ||||||||    
T  32352264 aaagagtcatacaaaatgtatgtaatatgatttgtcgaaccacttttacatt 32352213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 32368925 - 32368874
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||||  |||||||||||  |||||||||||||||| ||||||||    
T  32368925 aaagagtcatacaaaatgtatgtaatatgatttgtcgaaccacttttacatt 32368874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 310
Target Start/End: Original strand, 10600386 - 10600492
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||| ||||||||||| |||||||  ||||   ||||| || ||||| ||| |||||||||||| | | |||||| | ||||| || ||||||||    
T  10600386 ttcataaagtaacctatgaatttgatgaaagctcgctcattttatggaaaaacattacacaacatgtcctacgatttctgctatgatcatgcttgtaata 10600485  T
Q  304 atcaaaa 310  Q
    | |||||    
T  10600486 accaaaa 10600492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 24681046 - 24681096
Alignment:
Q  261 cacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    |||||||||||  ||| ||||||||||||| ||| ||||||||||||||||    
T  24681046 cacaacatgtcataggatttctggtttgattctgcttgtaataatcaaaac 24681096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 25094920 - 25094867
Alignment:
Q  258 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    |||||||||||| || ||  ||||||||||||||||| ||||||||||| ||||    
T  25094920 ttgcacaacatgccctagaatttctggtttgatcctgcttgtaataatctaaac 25094867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 27123654 - 27123716
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||| |||| |||||||||||| ||||||| ||||||||| |||  |||| |||||||||||    
T  27123654 aaagagttatacataatgtatgtaatctgatttatcgaaccaccttt--attttaatgcaatgca 27123716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Original strand, 28291771 - 28291832
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaa 265  Q
    ||||||||| ||||||||||||||||||| | |  || ||||| || |||||||||||||||    
T  28291771 ttcataaagtaacctatgaatatgatgaacatttatgcattttatggaaaaagattgcacaa 28291832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 271
Target Start/End: Complemental strand, 11030536 - 11030468
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct-gaaaaaagattgcacaacatgtc 271  Q
    ||||||||||||||||||||| ||| ||| |||||   ||||||| ||||||  |||||||||||||||    
T  11030536 ttcataaagcaacctatgaatttgacgaacactcgctcattttctggaaaaaccattgcacaacatgtc 11030468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 13110055 - 13110003
Alignment:
Q  258 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 310  Q
    ||||||||||||||| ||| ||||||||||||| ||  ||||||||| |||||    
T  13110055 ttgcacaacatgtcctaggatttctggtttgatgctacttgtaataaccaaaa 13110003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 199 - 314
Target Start/End: Complemental strand, 25018559 - 25018444
Alignment:
Q  199 ttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttg 298  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||  |||||||||||||||||||||| ||| |||||||||||||| || |||    
T  25018559 ttgtattcataaagcaacctatgaatatgatgaacactcgcgtattttctagaaaaagattgcacaacatgtcctaggatttctggtttgatcatgcttg 25018460  T
Q  299 taataatcaaaactag 314  Q
    ||||||||||||||||    
T  25018459 taataatcaaaactag 25018444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 16083563 - 16083441
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||||||||||| ||||||| | |  | |||||| || |||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  16083563 ttcataaagcaacctatgaatttgatgaacattaatctattttatggaaaaagattgcataacatgtcctagggtttctggtttgatcctgtttgtaata 16083464  T
Q  304 atcaaaactagtctggttgttta 326  Q
    |||||||||||||| ||||||||    
T  16083463 atcaaaactagtcttgttgttta 16083441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 327
Target Start/End: Original strand, 44787540 - 44787663
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||| ||||||||||||||| | || | | |||  ||||||||||||||||||||||||  | | ||| ||||||||||||  ||||||||    
T  44787540 ttcataaagcaacttatgaatatgatgaacattcatatctttcttgaaaaaagattgcacaacatgtcatatgatttatggtttgatcctagttgtaata 44787639  T
Q  304 atcaaaactagtctggttgtttat 327  Q
    |||||||||||||| |||||||||    
T  44787640 atcaaaactagtcttgttgtttat 44787663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 33379543 - 33379665
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    |||||||||||||||||| |||||||||| | || | || ||| |||||||||||||||||| |||||| | | |||||| |||| ||||| ||||||||    
T  33379543 ttcataaagcaacctatggatatgatgaacattcatatactttatgaaaaaagattgcacaatatgtcctaagatttctgatttggtcctgcttgtaata 33379642  T
Q  304 atcaaaactagtctggttgttta 326  Q
    |||||||||| ||| ||||||||    
T  33379643 atcaaaactaatcttgttgttta 33379665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 326
Target Start/End: Complemental strand, 11821721 - 11821602
Alignment:
Q  207 ataaagcaacctatgaatatgatgaat----actcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 302  Q
    |||||||||||||||||||||||||||    | || |||||||| ||||||||||||||||||| ||||| | | ||||||||||||  |   |||||||    
T  11821721 ataaagcaacctatgaatatgatgaatgaatattcatgtattttatgaaaaaagattgcacaacttgtccta-gatttctggtttgaatc---ttgtaat 11821626  T
Q  303 aatcaaaactagtctggttgttta 326  Q
    ||||||||||||||  ||||||||    
T  11821625 aatcaaaactagtcatgttgttta 11821602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 24633947 - 24634071
Alignment:
Q  202 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 301  Q
    ||||||| ||| ||||||||||||||||||| | || |  | |||||  ||||| |||||| ||||||||  ||| ||| |||| |||||||| ||||||    
T  24633947 tattcatcaagaaacctatgaatatgatgaacattcatacaatttctagaaaaaaattgcataacatgtcaaaggatttatggtgtgatcctgcttgtaa 24634046  T
Q  302 taatcaaaactagtctggttgttta 326  Q
    ||||||||||||||||  |||||||    
T  24634047 taatcaaaactagtcttattgttta 24634071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 17615128 - 17615068
Alignment:
Q  251 aaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||| |||||||||| |||||    
T  17615128 aaaaacattgcacaacatgtcctaggatttctggtttgatcctgcttgtaataattaaaac 17615068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 25018730 - 25018666
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||||  |||||||||||||| ||||| |||||||| |||| ||||||||||||||||    
T  25018730 aaagagtcatacaaaatgtatgtaaactaatttgccgaaccacctttatatttaaatgcaatgca 25018666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 13966308 - 13966195
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgca-caacatgtcccagggtttctggtttgatcctgtttgtaat 302  Q
    |||||||| |||||||||||||||||||| | || |||||||| |  |||||||||| | |||||| ||  | | ||||||||||||||||| ||  |||    
T  13966308 ttcataaaacaacctatgaatatgatgaacattcatgtattttttagaaaaagattgtaccaacatttcataagatttctggtttgatcctgcttagaat 13966209  T
Q  303 aatcaaaactagtc 316  Q
    ||||| ||||||||    
T  13966208 aatcataactagtc 13966195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 22608133 - 22608185
Alignment:
Q  259 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    |||||||||||||| ||| |||||||||||||| |||||||||||||| ||||    
T  22608133 tgcacaacatgtcctaggatttctggtttgatcatgtttgtaataatcgaaac 22608185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 33102894 - 33102842
Alignment:
Q  259 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    |||||||||||||| | | ||||||||||||||||| ||||||||||||||||    
T  33102894 tgcacaacatgtcctaagatttctggtttgatcctgcttgtaataatcaaaac 33102842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 24633326 - 24633378
Alignment:
Q  28 gaaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||  ||||||||    
T  24633326 gaaagagtcatacataatgtatgtaatctgatttgtagaaccaactttacatt 24633378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 11821898 - 11821848
Alignment:
Q  43 aatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    |||||||||||  |||||| ||||||||| |||||||| ||||||||||||    
T  11821898 aatgtatgtaacttgatttatcgaaccacctttacattcaaatgcaatgca 11821848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 23455238 - 23455188
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacat 79  Q
    ||||||||||||  |||||||||||  |||||||||||||||| |||||||    
T  23455238 aaagagtcatacaaaatgtatgtaatatgatttgtcgaaccacctttacat 23455188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 202 - 311
Target Start/End: Original strand, 17162197 - 17162306
Alignment:
Q  202 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 301  Q
    ||||||||||||||||||||||||||||||| | || |||||||| || |||||||||||||||||||||  ||| ||||||||||||||||| ||||||    
T  17162197 tattcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaagattgcacaacatgtcataggatttctggtttgatcctgcttgtaa 17162296  T
Q  302 taatcaaaac 311  Q
    ||||||||||    
T  17162297 taatcaaaac 17162306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 168 - 317
Target Start/End: Complemental strand, 23389070 - 23388923
Alignment:
Q  168 cgaaagacatttactttcatataaaagaccgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaaca 267  Q
    ||||||||||| ||||||||  |||| |  ||||||||  ||||||||||||||||||||||||| ||||| ||||| | | ||||||||||||||||||    
T  23389070 cgaaagacatt-actttcatgcaaaaaattgttgtatttgtaaagcaacctatgaatatgatgaacactcgcgtattcttt-aaaaaagattgcacaaca 23388973  T
Q  268 tgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtct 317  Q
    ||||| ||| |||||||||||||| || ||||||||||||||||||||||    
T  23388972 tgtcctaggatttctggtttgatcatgcttgtaataatcaaaactagtct 23388923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 214 - 326
Target Start/End: Original strand, 20515755 - 20515867
Alignment:
Q  214 aacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaacta 313  Q
    ||||||||||||||||||| | || |  | |||||| ||||||||| |||||||||||| | | ||||||||||||||||| ||||||||||||||||||    
T  20515755 aacctatgaatatgatgaacattcatacactttctggaaaaagattacacaacatgtcctaagatttctggtttgatcctgcttgtaataatcaaaacta 20515854  T
Q  314 gtctggttgttta 326  Q
    ||||  |||||||    
T  20515855 gtcttattgttta 20515867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 28760668 - 28760737
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaa 89  Q
    ||||||||||| ||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||    
T  28760668 gtctagagaaaagagtcatatagaatgtatgtaaactgatttgtcgaaccacctttacatttaaatgcaa 28760737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 294
Target Start/End: Original strand, 28760852 - 28760949
Alignment:
Q  198 gttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttct-gaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 294  Q
    ||||||||||| | ||||||||||||||||||||||||||  | ||||||| || |||||||| ||||||| | |||| | ||||| |||||||||||    
T  28760852 gttgtattcattaggcaacctatgaatatgatgaatactcacgcattttctggataaaagattacacaacaagacccaagatttctagtttgatcctg 28760949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 13370282 - 13370171
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||  || |||||||||||||||| | ||   |||||| || |||||||||||||||||||| | ||  |||||| |||||||||| ||||||||    
T  13370282 ttcataaaataaactatgaatatgatgaacattcacatattttttggaaaaagattgcacaacatgttctagaatttctgatttgatcctgcttgtaata 13370183  T
Q  304 atcaaaactagt 315  Q
    || |||| ||||    
T  13370182 attaaaattagt 13370171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 327
Target Start/End: Original strand, 16467498 - 16467623
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctg--aaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 301  Q
    |||||||| ||| |||||| ||||||||| | ||||| ||||| ||  |||||| ||||||||| |||||| | | ||||||||||||||  | ||||||    
T  16467498 ttcataaaacaaactatgagtatgatgaacattcgtgcattttttggaaaaaaatattgcacaatatgtcctatgatttctggtttgatctcgcttgtaa 16467597  T
Q  302 taatcaaaactagtctggttgtttat 327  Q
    |||| || ||||||||  ||||||||    
T  16467598 taataaacactagtcttattgtttat 16467623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 309
Target Start/End: Complemental strand, 17636624 - 17636519
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||| |||| || ||||||| ||||    | ||||||||||||  |||||||| || ||| ||| ||||||||||||||||| ||||||||    
T  17636624 ttcataaagcaacttatggatctgatgaacactcactcactttctgaaaaaactttgcacaatatatcctaggatttctggtttgatcctgcttgtaata 17636525  T
Q  304 atcaaa 309  Q
    | ||||    
T  17636524 accaaa 17636519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 309
Target Start/End: Complemental strand, 17676482 - 17676377
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||| |||| || ||||||| ||||    | ||||||||||||  |||||||| || ||| ||| ||||||||||||||||| ||||||||    
T  17676482 ttcataaagcaacttatggatctgatgaacactcactcactttctgaaaaaactttgcacaatatatcctaggatttctggtttgatcctgcttgtaata 17676383  T
Q  304 atcaaa 309  Q
    | ||||    
T  17676382 accaaa 17676377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 21498140 - 21498201
Alignment:
Q  30 aagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  21498140 aagagtcatacataacgtatgtaatctgatttgtcgaaccacttttacatt--aatgcaatgca 21498201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 2482112 - 2482040
Alignment:
Q  20 tgtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    |||||||||||| |||||||||| |||||||||||  |||||||||||||||  ||||||||  |||||||||||    
T  2482112 tgtctagagaaaagagtcatacggaatgtatgtaatttgatttgtcgaaccatctttacatt--aatgcaatgca 2482040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 17636788 - 17636737
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| ||||||||    
T  17636788 aaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacatt 17636737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 17676646 - 17676595
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||||  ||||||||||| ||||||||||||||||| ||||||||    
T  17676646 aaagagtcatacaaaatgtatgtaatctgatttgtcgaaccacctttacatt 17676595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 15438238 - 15438305
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtc 271  Q
    |||||||||||||||| |||  |||| || | || |  ||||||||||||||||||||||||||||||    
T  15438238 ttcataaagcaacctaagaacttgattaacattcatacattttctgaaaaaagattgcacaacatgtc 15438305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 29891564 - 29891614
Alignment:
Q  261 cacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    |||||||||||| ||| ||| ||||||||||||| ||||||||| ||||||    
T  29891564 cacaacatgtcctaggatttatggtttgatcctgcttgtaataaccaaaac 29891614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 21498352 - 21498421
Alignment:
Q  257 attgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtctggttgttta 326  Q
    |||||||||||| ||  ||| ||||| |||||| | || |||||||||||||| |||||||| |||||||    
T  21498352 attgcacaacatatcataggatttctagtttgaccgtgcttgtaataatcaaagctagtctgcttgttta 21498421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 15438052 - 15438112
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||| |||||||||  |||||||||||  ||||||||||||||||  |||||||    
T  15438052 gtctagagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccaccattacatt 15438112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 18929180 - 18929128
Alignment:
Q  259 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    |||||||||||||| ||| | ||||||||| ||||| | ||||||||||||||    
T  18929180 tgcacaacatgtcctaggatctctggtttggtcctgctcgtaataatcaaaac 18929128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 25520679 - 25520731
Alignment:
Q  259 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    |||||||||||||| ||| |||  |||||||||||| ||||||||| ||||||    
T  25520679 tgcacaacatgtcctaggattttgggtttgatcctgcttgtaataaccaaaac 25520731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 31404106 - 31404169
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||| ||||  |||||||||||| |||||||||||||||| |||  |||| |||||||||||    
T  31404106 aaagagttatacagaatgtatgtaaaatgatttgtcgaaccaccttt-tattttaatgcaatgca 31404169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 32890486 - 32890426
Alignment:
Q  21 gtctagagaaag-agtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    |||||||||||  |||||||| |||||||||||| || ||||||| |||||| ||||||||    
T  32890486 gtctagagaaaatagtcatacataatgtatgtaatcttatttgtcaaaccacttttacatt 32890426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 53589314 - 53589427
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaa-aagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 302  Q
    ||||||||||||| ||||||||||||||| | || ||||||||||||||| |||||||||||| |||||| ||| ||||||||||||||||  |||||||    
T  53589314 ttcataaagcaacatatgaatatgatgaacattcatgtattttctgaaaaaaagattgcacaaaatgtcctaggatttctggtttgatcctacttgtaat 53589413  T
Q  303 aatcaaaactagtc 316  Q
    ||||||||||||||    
T  53589414 aatcaaaactagtc 53589427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 44451077 - 44451198
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||||||||||||||||||| | || |||||||| || ||||||||||||||| || ||| ||| |||||| ||||||| || ||||||||    
T  44451077 ttcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaagattgcacaatat-tcctaggatttctgatttgatcttgcttgtaata 44451175  T
Q  304 atcaaaactagtctggttgttta 326  Q
    |||||||||||||  ||||||||    
T  44451176 atcaaaactagtcatgttgttta 44451198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 204 - 327
Target Start/End: Complemental strand, 15987480 - 15987357
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    |||||||||||||||||||| |||||||| | || | |||||| || |||||||||||||||||||||| ||  ||||| ||||||||||  ||||||||    
T  15987480 ttcataaagcaacctatgaaaatgatgaacattcatatattttatggaaaaagattgcacaacatgtcctagaatttctagtttgatcctacttgtaata 15987381  T
Q  304 atcaaaactagtctggttgtttat 327  Q
    | |||||||| ||| |||||||||    
T  15987380 accaaaactaatcttgttgtttat 15987357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 316
Target Start/End: Original strand, 4022931 - 4023043
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    |||||||| |||||||||||||||||||| | || |||||||| |  |||||||||||||||||||||  | |  |||||||||||||||| ||||||||    
T  4022931 ttcataaaacaacctatgaatatgatgaacattcatgtattttttagaaaaagattgcacaacatgtcataagaattctggtttgatcctgcttgtaata 4023030  T
Q  304 atcaaaactagtc 316  Q
    |||| || |||||    
T  4023031 atcataaatagtc 4023043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 48896131 - 48896060
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatg 91  Q
    ||||||||||| ||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  48896131 gtctagagaaaagagtcatacataatgtatgtaaactggtttgtcgaaccacctttacatttaaatgcaatg 48896060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 1744986 - 1744877
Alignment:
Q  207 ataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatc 306  Q
    |||||||||||||| ||||||||||| | || |  ||||| ||||||||||||||||||||| ||| | | |||||  ||| ||||| ||||||||||||    
T  1744986 ataaagcaacctataaatatgatgaacattcatacattttttgaaaaaagattgcacaacatatcctaagatttctaatttaatcctatttgtaataatc 1744887  T
Q  307 aaaactagtc 316  Q
    ||||||||||    
T  1744886 aaaactagtc 1744877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 25466379 - 25466271
Alignment:
Q  208 taaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatca 307  Q
    |||| |||||||||||||||||||| | || | ||||||||   ||||||||||| ||||||||| ||| |||   ||||||||||| ||||||||||||    
T  25466379 taaaacaacctatgaatatgatgaacattcatatattttctaggaaaagattgcaaaacatgtcctaggattttcagtttgatcctgcttgtaataatca 25466280  T
Q  308 aaactagtc 316  Q
    |||||||||    
T  25466279 aaactagtc 25466271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 310
Target Start/End: Complemental strand, 48895953 - 48895840
Alignment:
Q  197 cgttgtattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtt 296  Q
    |||||||||||||||||||| |||||||||||| || ||||    ||||| || |||||||||||||| ||||||| |   ||||| ||||||||||| |    
T  48895953 cgttgtattcataaagcaacgtatgaatatgataaacactcacacattttttggaaaaagattgcacatcatgtcctaaaatttctagtttgatcctgct 48895854  T
Q  297 tgtaataatcaaaa 310  Q
    ||||||||| ||||    
T  48895853 tgtaataataaaaa 48895840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 45280154 - 45280262
Alignment:
Q  205 tcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataa 304  Q
    |||||||||||||||||||||||||||| |    | ||||||||| |||||||||||||||||| ||| | | ||||| | |||||| |  |||||||||    
T  45280154 tcataaagcaacctatgaatatgatgaacatatatatattttctggaaaaagattgcacaacatatcctacgatttctaggttgatcgttcttgtaataa 45280253  T
Q  305 tcaaaacta 313  Q
    |||||||||    
T  45280254 tcaaaacta 45280262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 25321104 - 25320985
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaa-------aaaagattgcacaacatgtcccagggtttctggtttgatcctgtt 296  Q
    ||||||||||||||||||||||||||||| | || |  ||||| ||||       ||||||||||||||||||||| | | ||| |||||||| | || |    
T  25321104 ttcataaagcaacctatgaatatgatgaacattcatacattttttgaagaaaaaaaaaagattgcacaacatgtcctacgatttttggtttgaccatgct 25321005  T
Q  297 tgtaataatcaaaactagtc 316  Q
    ||||||||||||||||||||    
T  25321004 tgtaataatcaaaactagtc 25320985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 15987645 - 15987587
Alignment:
Q  33 agtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  15987645 agtcatacaaaatgtatgtaatctgatttgtcgaaccacatttacatt--aatgcaatgca 15987587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 14132288 - 14132395
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||| ||||||||||| ||||||| | ||    | ||| || ||||| ||||||||||||||||  || ||||| ||||||||||| ||||||||    
T  14132288 ttcataaagaaacctatgaatttgatgaacattcactcactttttggaaaaacattgcacaacatgtccttggatttctagtttgatcctgcttgtaata 14132387  T
Q  304 atcaaaac 311  Q
    | ||||||    
T  14132388 accaaaac 14132395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 315
Target Start/End: Original strand, 4026610 - 4026686
Alignment:
Q  239 tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagt 315  Q
    |||||||| || |||||||||| |||| |||||| |   |||||||||||||| || || |||||||||||||||||    
T  4026610 tgtattttatggaaaaagattgtacaatatgtcctaaaatttctggtttgatcttgcttataataatcaaaactagt 4026686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 4765961 - 4766013
Alignment:
Q  259 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    |||||||||||||| ||| ||||||||||| ||||| ||||||||| ||||||    
T  4765961 tgcacaacatgtcctaggatttctggtttgttcctgcttgtaataaccaaaac 4766013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 293
Target Start/End: Complemental strand, 5495417 - 5495370
Alignment:
Q  246 tctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcct 293  Q
    ||||||||||  ||||||||||||||| ||| ||||||||||||||||    
T  5495417 tctgaaaaaactttgcacaacatgtcctaggatttctggtttgatcct 5495370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 27717983 - 27718047
Alignment:
Q  27 agaaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||| ||||  ||||||||||| ||||||| ||||||||| ||||||||  |||||||||||    
T  27717983 agaaagagttatacagaatgtatgtaatctgatttatcgaaccacctttacatt--aatgcaatgca 27718047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 17132605 - 17132537
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct---gaaaaaagattgcacaacatg 269  Q
    ||||||||| || |||||||||||||||||| || ||||||||||    ||||||||||||| ||||||    
T  17132605 ttcataaaggaaactatgaatatgatgaatattcatgtattttctataaaaaaaagattgcataacatg 17132537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 17439136 - 17439198
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    |||||||||||   ||| ||||||| |||||||||||||| |||||||||||  |||||||||||    
T  17439136 aaagagtcatataaaatatatgtaatctgatttgtcgaactacatttacatt--aatgcaatgca 17439198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 1085601 - 1085529
Alignment:
Q  222 aatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctg 294  Q
    ||||||||||| | || | ||||||||  ||||  |||||||||||||||| ||| ||||| |||||||||||    
T  1085601 aatatgatgaacattcatatattttctagaaaatcattgcacaacatgtcctaggatttctagtttgatcctg 1085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 10235954 - 10235833
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    |||||||||||| ||||||| |||||||| | || |||||||| || |||||||||||||||||||||| ||  |||||||||||||| || ||||||||    
T  10235954 ttcataaagcaaactatgaa-atgatgaacattcatgtattttttggaaaaagattgcacaacatgtcctagaatttctggtttgatcatgcttgtaata 10235856  T
Q  304 atcaaaactagtctggttgttta 326  Q
    ||||||||||||||  |||||||    
T  10235855 atcaaaactagtcttattgttta 10235833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 9423012 - 9422901
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||| ||||||||||||||||||| | || |||||||| || ||||||||||||||| || ||| ||| |||||| |||||||||| ||||||||    
T  9423012 ttcataaagtaacctatgaatatgatgaacattcatgtattttatggaaaaagattgcacaatat-tcctaggatttctgatttgatcctgcttgtaata 9422914  T
Q  304 atcaaaactagtc 316  Q
    |||||||||||||    
T  9422913 atcaaaactagtc 9422901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 204 - 317
Target Start/End: Original strand, 28619443 - 28619556
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||| ||||||||||||||| | ||    |||||||| |||| ||||||||||||||||| | | ||||||||||||||||| ||||||||    
T  28619443 ttcataaagcaacttatgaatatgatgaacattcacacattttctggaaaaggattgcacaacatgtcctatgatttctggtttgatcctgcttgtaata 28619542  T
Q  304 atcaaaactagtct 317  Q
    || |||||||||||    
T  28619543 attaaaactagtct 28619556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 24364366 - 24364479
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct--gaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaa 301  Q
    |||||||||||||||||||||||||||||   ||    ||||| |  |||||||||||||| ||||||| | ||| || |||||||||||||| ||||||    
T  24364366 ttcataaagcaacctatgaatatgatgaacgttcacacatttttttggaaaaaagattgcagaacatgttctaggattcctggtttgatcctgcttgtaa 24364465  T
Q  302 taatcaaaactagt 315  Q
    ||||||||||||||    
T  24364466 taatcaaaactagt 24364479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 307
Target Start/End: Complemental strand, 22987633 - 22987533
Alignment:
Q  207 ataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatc 306  Q
    |||||||||||||||||||||||||| | ||    | |||||| |||||||||||||||||||||  | | ||||| ||||||||||| |||| ||||||    
T  22987633 ataaagcaacctatgaatatgatgaacattcacacactttctggaaaaagattgcacaacatgtcatatgatttctagtttgatcctgcttgttataatc 22987534  T
Q  307 a 307  Q
    |    
T  22987533 a 22987533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 24308960 - 24308846
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttct--gaaaaaaga-ttgcacaacatgtcccagggtttctggtttgatcctgtttgta 300  Q
    |||||||||||||||||||||||||||||   ||    ||||| |  ||||||||| ||||| ||||||| | ||| || |||||||||||||| |||||    
T  24308960 ttcataaagcaacctatgaatatgatgaacgttcacacatttttttggaaaaaagaattgcagaacatgttctaggattcctggtttgatcctgcttgta 24308861  T
Q  301 ataatcaaaactagt 315  Q
    |||||||||||||||    
T  24308860 ataatcaaaactagt 24308846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 24663643 - 24663572
Alignment:
Q  21 gtctagaga-aagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||| ||||||| ||||||||  |||||||||||    
T  24663643 gtctagagataagagtcatacataatgtatgtaatctgatttgttgaaccacctttacatt--aatgcaatgca 24663572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 24878225 - 24878165
Alignment:
Q  251 aaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    ||||| |||||||||||||||| ||| |||||| |||||||||| |||||||||| |||||    
T  24878225 aaaaacattgcacaacatgtcctaggatttctgctttgatcctgcttgtaataattaaaac 24878165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 31533262 - 31533329
Alignment:
Q  244 tttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    ||||||||||||  ||||||||||||||| ||| |||| |||| ||||||| ||||||||| ||||||    
T  31533262 tttctgaaaaaactttgcacaacatgtcctaggatttcgggttcgatcctgcttgtaataaccaaaac 31533329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 25667473 - 25667581
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaa-gattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 302  Q
    ||||||||||||||||||||| |||||||  |||    ||||||||||||||  |||||||||||  ||| | | ||| | ||||||||||| |||||||    
T  25667473 ttcataaagcaacctatgaatttgatgaactctcactcattttctgaaaaaaccattgcacaacagctcctaagatttttagtttgatcctgcttgtaat 25667572  T
Q  303 aatcaaaac 311  Q
    || ||||||    
T  25667573 aaccaaaac 25667581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 17167564 - 17167615
Alignment:
Q  259 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 310  Q
    |||||||||||||| ||| ||| |||||| |||||| |||||||||||||||    
T  17167564 tgcacaacatgtcctaggatttatggttttatcctgcttgtaataatcaaaa 17167615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 31533055 - 31533106
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    |||||||||||   ||||||||||| ||||||||||||||||| ||||||||    
T  31533055 aaagagtcatagagaatgtatgtaatctgatttgtcgaaccacctttacatt 31533106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 22987819 - 22987748
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||| | |||||||  ||||||||||| ||||| ||||||||||| ||||||||  |||||||||||    
T  22987819 gtctagagaaaagtgtcatacaaaatgtatgtaatctgatatgtcgaaccacctttacatt--aatgcaatgca 22987748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 30985579 - 30985626
Alignment:
Q  44 atgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    |||||||||| |||||||||||||||||||||  |||| |||||||||||    
T  30985579 atgtatgtaatctgatttgtcgaaccacattt--attttaatgcaatgca 30985626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 24309142 - 24309082
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||| |||||||||  ||| ||||||| |||||||||||||| || ||||||||    
T  24309142 gtctagagaaaagagtcatacagaatatatgtaatctgatttgtcgaactacctttacatt 24309082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 24364184 - 24364244
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||| |||||||||  ||| ||||||| |||||||||||||| || ||||||||    
T  24364184 gtctagagaaaagagtcatacagaatatatgtaatctgatttgtcgaactacctttacatt 24364244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 25951169 - 25951117
Alignment:
Q  264 aacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtc 316  Q
    ||||||||| ||| | ||||||||||||||| |||| |||||||| |||||||    
T  25951169 aacatgtcctaggatctctggtttgatcctgcttgttataatcaatactagtc 25951117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 204 - 326
Target Start/End: Original strand, 11994128 - 11994249
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||||||||||||||||||| | || |||||||| || ||||| ||||||||| || ||| ||| |||||| |||||||||| ||||||||    
T  11994128 ttcataaagcaacctatgaatatgatgaacattcatgtattttatggaaaaatattgcacaatat-tcctaggatttctgatttgatcctgcttgtaata 11994226  T
Q  304 atcaaaactagtctggttgttta 326  Q
    || ||||||||||  ||||||||    
T  11994227 ataaaaactagtcatgttgttta 11994249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 207 - 326
Target Start/End: Complemental strand, 28037069 - 28036950
Alignment:
Q  207 ataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatc 306  Q
    |||||||||||||||||||||||||| | || |  | ||||| ||||||||||||||||||| ||| | | |||||| |||||||||  |||||||||||    
T  28037069 ataaagcaacctatgaatatgatgaacattcatacactttctaaaaaaagattgcacaacatatcctaagatttctgatttgatcctacttgtaataatc 28036970  T
Q  307 aaaactagtctggttgttta 326  Q
    ||||||||| | ||||||||    
T  28036969 aaaactagttttgttgttta 28036950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 316
Target Start/End: Complemental strand, 12468828 - 12468716
Alignment:
Q  205 tcataaagcaacctatgaatatgatgaatactcgtgtattttctg-aaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||  |||||||||||||||| | || | |||||| || ||||||||||||| ||||||||| ||| ||||||| |||| | || ||||||||    
T  12468828 tcataaagcagtctatgaatatgatgaacattcatatattttatggaaaaaagattgcataacatgtcctaggatttctggattgaccatgcttgtaata 12468729  T
Q  304 atcaaaactagtc 316  Q
    |||||||||||||    
T  12468728 atcaaaactagtc 12468716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 7524935 - 7525037
Alignment:
Q  208 taaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatca 307  Q
    ||||||||||||||||| ||||||| ||||   || |||||||||||| ||||| || ||||||  ||| ||||||||||||||||  ||||||||| ||    
T  7524935 taaagcaacctatgaatttgatgaacactcacttactttctgaaaaaacattgcgcaccatgtcttaggatttctggtttgatcctacttgtaataacca 7525034  T
Q  308 aaa 310  Q
    |||    
T  7525035 aaa 7525037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 7948223 - 7948300
Alignment:
Q  239 tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtc 316  Q
    |||||||| || |||||||||||||  | ||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  7948223 tgtattttatggaaaaagattgcacgccgtgtcctaggatttatggtttgatcctgtttgtaataatcaagactagtc 7948300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 1545647 - 1545709
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||||  ||||||| ||| ||||||||||||||||||||||||||  |||||||||||    
T  1545647 aaagagtcatacaaaatgtatataatctgatttgtcgaaccacatttacatt--aatgcaatgca 1545709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 7524765 - 7524816
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    |||||||||||| |||| ||||||| ||||||||||||||||| ||||||||    
T  7524765 aaagagtcatacataatttatgtaatctgatttgtcgaaccacctttacatt 7524816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 1545825 - 1545893
Alignment:
Q  202 tattcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgt 270  Q
    |||||||||| |||| ||||||||| ||||| | |  |||||||||| |||||||||||||||| ||||    
T  1545825 tattcataaaacaacttatgaatataatgaacatttatgtattttctaaaaaaagattgcacaatatgt 1545893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 18046333 - 18046266
Alignment:
Q  243 ttttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 310  Q
    ||||||| |||||  ||||||||||||||| ||  ||||| ||||||||||| ||||||||| |||||    
T  18046333 ttttctggaaaaactttgcacaacatgtcctagtatttctagtttgatcctgcttgtaataaccaaaa 18046266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 12468992 - 12468945
Alignment:
Q  44 atgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    |||||||||| |||||||||||||||||||||||  || |||||||||||    
T  12468992 atgtatgtaatctgatttgtcgaaccacatttac--tttaatgcaatgca 12468945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 41132008 - 41131966
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccac 71  Q
    ||||||||||||  ||||||||||| |||||||||||||||||    
T  41132008 aaagagtcatacaaaatgtatgtaatctgatttgtcgaaccac 41131966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 4978852 - 4978893
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaacca 70  Q
    |||||||||||| ||||| |||||| ||||||||||||||||    
T  4978852 aaagagtcatacataatgcatgtaatctgatttgtcgaacca 4978893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 9022554 - 9022610
Alignment:
Q  21 gtctagag-aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacattta 76  Q
    |||||||| ||||||||||||  ||||||||||| ||||||| ||||||||| ||||    
T  9022554 gtctagagtaaagagtcatacagaatgtatgtaatctgatttctcgaaccaccttta 9022610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 326
Target Start/End: Complemental strand, 89673 - 89551
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    |||||||| |||||||||||||||||||| | || | |||||| || ||||||||||| ||| |||||| ||| |||||| ||| |||||  ||||||||    
T  89673 ttcataaaacaacctatgaatatgatgaacattcatatattttatggaaaaagattgcgcaatatgtcctaggatttctgctttaatcctccttgtaata 89574  T
Q  304 atcaaaactagtctggttgttta 326  Q
    ||||||||||||||  |||||||    
T  89573 atcaaaactagtcttattgttta 89551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 317
Target Start/End: Complemental strand, 16288639 - 16288527
Alignment:
Q  205 tcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataa 304  Q
    ||||||| |||||||||||| ||||||| | || |  | |||||| |||||||||||||||||||||  | |||||||||||| ||  |||||||| |||    
T  16288639 tcataaaacaacctatgaatttgatgaacaatcatacactttctggaaaaagattgcacaacatgtctgaaggtttctggtttaatgttgtttgtattaa 16288540  T
Q  305 tcaaaactagtct 317  Q
    |||||||||||||    
T  16288539 tcaaaactagtct 16288527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 316
Target Start/End: Complemental strand, 43851405 - 43851328
Alignment:
Q  239 tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactagtc 316  Q
    ||||||||||||||||||||||| |||||||||| ||| |||||| ||| |||||| |||||||||| ||||| ||||    
T  43851405 tgtattttctgaaaaaagattgcgcaacatgtcctaggatttctgattttatcctgcttgtaataataaaaacaagtc 43851328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 12424854 - 12424781
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||| |||||||||  |||||||||||||  |||||||||||||| ||||||||||||||| |||||    
T  12424854 gtctagagaaaagagtcatacaaaatgtatgtaaaccaatttgtcgaaccacctttacatttaaatgcgatgca 12424781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 24924953 - 24924891
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    |||||||||||| |||||||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  24924953 aaagagtcatacataatgtatgtaatctgatttgtcgaaccacctttacatt--aatgcaatgca 24924891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 4732474 - 4732422
Alignment:
Q  259 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  4732474 tgcacaacatgtcctaggatttctggtttgatcctgtttgtaataaccaaaac 4732422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 24924771 - 24924652
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaa-------aaaagattgcacaacatgtcccagggtttctggtttgatcctgtt 296  Q
    ||||||||||||||| ||||||||||||| | |  |||||||||||||       |||| |||| |||| |||||| ||  |||||||||||||| || |    
T  24924771 ttcataaagcaacctgtgaatatgatgaacatttatgtattttctgaacaaacaaaaaaaattgtacaatatgtcctagtatttctggtttgatcatgct 24924672  T
Q  297 tgtaataatcaaaactagtc 316  Q
    | ||||||||||||||||||    
T  24924671 tataataatcaaaactagtc 24924652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 6337864 - 6337797
Alignment:
Q  243 ttttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaa 310  Q
    |||||||||||||  ||||||||||||||| | | ||||||||||||| |||| |||||||| |||||    
T  6337864 ttttctgaaaaaactttgcacaacatgtcctaagatttctggtttgattctgtctgtaataaccaaaa 6337797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 26654149 - 26654211
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    |||||||||||| ||||||||||||  |||||||||||||||| ||| ||||  |||||||||||    
T  26654149 aaagagtcatacataatgtatgtaatatgatttgtcgaaccacctttgcatt--aatgcaatgca 26654211  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 24476208 - 24476143
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatg 269  Q
    |||||||||||| |||||| ||||||||| | ||    |||||||| |||||||||||||||||||    
T  24476208 ttcataaagcaaactatgactatgatgaacattcaaacattttctggaaaaagattgcacaacatg 24476143  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 311
Target Start/End: Original strand, 9354703 - 9354771
Alignment:
Q  243 ttttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    ||||||| ||||| |||||||||||||||| |   |||||||||||||| ||  |||||||| ||||||    
T  9354703 ttttctggaaaaacattgcacaacatgtcctataatttctggtttgatcatgaatgtaataaccaaaac 9354771  T

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Target: scaffold0431 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 5121 - 5194
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatttaaatgcaatgca 93  Q
    ||||||||||| |||||||||  |||||||||||||  |||||||||||||| ||||||||||||||| |||||    
T  5121 gtctagagaaaagagtcatacaaaatgtatgtaaaccaatttgtcgaaccacctttacatttaaatgcgatgca 5194  T

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Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 304
Target Start/End: Original strand, 33440 - 33540
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||||||||| | ||||||| ||||    | |||||| |||||  ||||||||||||||  ||| ||||||||||||||||| ||||||||    
T  33440 ttcataaagcaacctatgagtctgatgaacactcactcactttctggaaaaactttgcacaacatgtcataggatttctggtttgatcctgcttgtaata 33539  T
Q  304 a 304  Q
    |    
T  33540 a 33540  T

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Target: scaffold0039; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 48335 - 48275
Alignment:
Q  21 gtctagagaa-agagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    |||||||||| ||||||||||  ||||||||||| ||||||||||||||||| ||||||||    
T  48335 gtctagagaatagagtcatacagaatgtatgtaatctgatttgtcgaaccacttttacatt 48275  T

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Target: scaffold0039; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 33266 - 33326
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||| ||||||||| ||||||||||||  ||| |||||||||||| ||||||||    
T  33266 gtctagagaaaagagtcatacataatgtatgtaatatgaattgtcgaaccacttttacatt 33326  T

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Target: scaffold0167 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 704 - 814
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcgtgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaata 303  Q
    ||||||||||||||||||||  || | || | || |  ||||| || |||||||||||||||||||||| ||| ||||| |||||| | || ||||||||    
T  704 ttcataaagcaacctatgaacttggttaacattcatacattttatggaaaaagattgcacaacatgtcctaggatttctagtttgaacttgcttgtaata 803  T
Q  304 atcaaaactag 314  Q
    |||||| ||||    
T  804 atcaaagctag 814  T

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Target: scaffold0167; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 10309 - 10360
Alignment:
Q  29 aaagagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    |||||||||||| |||||||||||| |||||||||| |||||| ||||||||    
T  10309 aaagagtcatacataatgtatgtaatctgatttgtcaaaccacctttacatt 10360  T

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Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 38905 - 38971
Alignment:
Q  15 acctgtgtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    ||||||||||||||||| ||||||||   ||||||||||| ||||||||||||||||| ||||||||    
T  38905 acctgtgtctagagaaaagagtcatataaaatgtatgtaatctgatttgtcgaaccacctttacatt 38971  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 39168 - 39223
Alignment:
Q  259 tgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaactag 314  Q
    |||||||||||||| | | ||||| ||||||||||| ||||||||| |||||||||    
T  39168 tgcacaacatgtcctaagatttctagtttgatcctgcttgtaataaccaaaactag 39223  T

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Target: scaffold0142 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 20402 - 20349
Alignment:
Q  258 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    ||||||||||||||||| | ||||||||||||||||| ||||||||| ||||||    
T  20402 ttgcacaacatgtcccaagatttctggtttgatcctgcttgtaataaccaaaac 20349  T

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Target: scaffold0337 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 4464 - 4356
Alignment:
Q  204 ttcataaagcaacctatgaatatgatgaatactcg-tgtattttctgaaaaaagattgcacaacatgtcccagggtttctggtttgatcctgtttgtaat 302  Q
    ||||||||||||||||||||| |||||||  |    | |||||||| |||||  | | ||||||| |||| ||| ||||||||||||||||| |||||||    
T  4464 ttcataaagcaacctatgaatttgatgaacgcaaactctattttcttaaaaacaaatccacaacacgtcctaggatttctggtttgatcctgcttgtaat 4365  T
Q  303 aatcaaaac 311  Q
    |||||||||    
T  4364 aatcaaaac 4356  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 376452 - 376502
Alignment:
Q  261 cacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    |||||||||||| ||| ||||||||||||||||  ||||||||||||||||    
T  376452 cacaacatgtcctaggatttctggtttgatcctccttgtaataatcaaaac 376502  T

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Target: scaffold0320 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 6484 - 6424
Alignment:
Q  21 gtctagagaaag-agtcatacgtaatgtatgtaaactgatttgtcgaaccacatttacatt 80  Q
    |||||||||||  |||||||| |||||||||||| ||||||||||||||| | ||||||||    
T  6484 gtctagagaaaatagtcatacataatgtatgtaatctgatttgtcgaaccgcctttacatt 6424  T

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Target: scaffold0040 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 26926 - 26982
Alignment:
Q  21 gtctagagaaa-gagtcatacgtaatgtatgtaaactgatttgtcgaaccacattta 76  Q
    ||||||||||| ||||||||| |||||||||||| || |||||||||||||| ||||    
T  26926 gtctagagaaaagagtcatacataatgtatgtaatctaatttgtcgaaccaccttta 26982  T

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Target: scaffold1102 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 1172 - 1225
Alignment:
Q  258 ttgcacaacatgtcccagggtttctggtttgatcctgtttgtaataatcaaaac 311  Q
    ||||||||||||||| ||  |||||||||||||| || ||||||||| ||||||    
T  1172 ttgcacaacatgtcctagaatttctggtttgatcttgcttgtaataaccaaaac 1225  T

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