View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_13 (Length: 332)
Name: NF2024_low_13
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 4774572 - 4774883
Alignment:
| Q |
17 |
catatacgaatatgctgagaatcgtgagatcataagatgaatgagacatgtaagtcacgtaaaaaatatttcagtgcaaatatataaagtgattcctcta |
116 |
Q |
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| T |
4774572 |
catatacgaatatgctgagaatcgtgagatcataagatgaatgagacatgtaagtcacgtaaaaaatatttcagtgtaaatatataaagtgattcctcta |
4774671 |
T |
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| Q |
117 |
ttttatttaacatattttcatagcatgtacgtgacagattgaagctggggaaggttgcaacggcaagtattctccaatggtcccaacaga-nnnnnnnnn |
215 |
Q |
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| T |
4774672 |
ttttatttaacatatttttatagcatgtacgtgacagattgaagctggggaaggttgcaacggcaagtattttccaatggtcccaacagatttttttttt |
4774771 |
T |
|
| Q |
216 |
nnatagaaactaactaattatctttacaatatctaaggatttgtagagagaaatgcatgatctcttataaactttttcttactgcacttcattgtgtcga |
315 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4774772 |
ttatagaaactaagtaattatctttacaatatctaaggatttgtagagagaaattcatgatctcttataaactttttcttactgcacttcattgtgtcga |
4774871 |
T |
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| Q |
316 |
atattcttggac |
327 |
Q |
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| T |
4774872 |
atattattggac |
4774883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 62 - 194
Target Start/End: Complemental strand, 23169187 - 23169055
Alignment:
| Q |
62 |
acatgtaagtcacgtaaaaaatatttcagtgcaaatatataaagtgattcctctattttatttaacatattttcatagcatgtacgtgacagattgaagc |
161 |
Q |
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||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23169187 |
acatgtaagtcacataacaaatatttcactacaaatatataaagtgattcctctattttatttaatatattttcatagcatgtacgtgacagattgaagc |
23169088 |
T |
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| Q |
162 |
tggggaaggttgcaacggcaagtattctccaat |
194 |
Q |
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| T |
23169087 |
tggggaaggttgcaacgacaagtaatctccaat |
23169055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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