View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_14 (Length: 314)
Name: NF2024_low_14
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_14 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 298
Target Start/End: Complemental strand, 11445830 - 11445542
Alignment:
| Q |
10 |
aagaatatggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatgg |
109 |
Q |
| |
|
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
11445830 |
aagaaaatggattccagtagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatgg |
11445731 |
T |
|
| Q |
110 |
cactcaaatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatctttgaaactccaccc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
11445730 |
cactcaaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccatcc |
11445631 |
T |
|
| Q |
210 |
ttcgaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggtttctttgcaaaaacaacactgatgaatggcaaagaag |
298 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11445630 |
ttcgaaagttagtgtcctgtatcgtctcttgcgcctgctaacacacaatggtttctttgcaaaaacaacactgatgaatggcaaagaag |
11445542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 298
Target Start/End: Original strand, 11547260 - 11547548
Alignment:
| Q |
10 |
aagaatatggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatgg |
109 |
Q |
| |
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||||| ||||||| || ||||||||||||||||||||||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
11547260 |
aagaaaatggattccagtagcaatggcagtgaagaaagtcagttttatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatgg |
11547359 |
T |
|
| Q |
110 |
cactcaaatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatctttgaaactccaccc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
11547360 |
cactcaaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccatcc |
11547459 |
T |
|
| Q |
210 |
ttcgaaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggtttctttgcaaaaacaacactgatgaatggcaaagaag |
298 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11547460 |
ttcgaaagttagtgtcctgtatcgtctcttgcgcctgctaacacacaatggtttctttgcaaaaacaacactgatgaatggcaaagaag |
11547548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 11507035 - 11507317
Alignment:
| Q |
16 |
atggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatggcactca |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| || ||||| |||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
11507035 |
atggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcactca |
11507134 |
T |
|
| Q |
116 |
aatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaa |
215 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
11507135 |
aatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccacccttctaa |
11507234 |
T |
|
| Q |
216 |
agttagtgtcctttatcgtctcttgcgcttgctaacacacaatggtttctttgcaaaaacaacactgatgaatggcaaagaag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
11507235 |
agttagtgtcctttatcgtctcttgcgcttgctaacacacaatggtttctttgcgaaaacaacactgatgagtggcaaagaag |
11507317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 11468796 - 11468533
Alignment:
| Q |
16 |
atggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatggcactca |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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|
| T |
11468796 |
atggatttcaagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactca |
11468697 |
T |
|
| Q |
116 |
aatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaa |
215 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| || ||||| || |||||| || ||||||||||||||||||||||||| |||||||| || |
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| T |
11468696 |
aatctgctgtggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaa |
11468597 |
T |
|
| Q |
216 |
agttagtgtcctttatcgtctcttgcgcttgctaacacacaatggtttctttgcaaaaacaaca |
279 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
11468596 |
agttagtgtcctatataggttcttgcgcttgctaacacacgatggtttcttcgcaaaaacaaca |
11468533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 11522665 - 11522928
Alignment:
| Q |
16 |
atggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatggcactca |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
11522665 |
atggatttcaagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactca |
11522764 |
T |
|
| Q |
116 |
aatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaa |
215 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||| || ||||| || |||||| || ||||||||||||||||||||||||| |||||||| || |
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|
| T |
11522765 |
aatctgctgtggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaa |
11522864 |
T |
|
| Q |
216 |
agttagtgtcctttatcgtctcttgcgcttgctaacacacaatggtttctttgcaaaaacaaca |
279 |
Q |
| |
|
|||||||||||| ||| | |||||||||||||||||||| |||||||||| |||||||||||| |
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|
| T |
11522865 |
agttagtgtcctatataggttcttgcgcttgctaacacacgatggtttcttcgcaaaaacaaca |
11522928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 39 - 279
Target Start/End: Original strand, 34783870 - 34784110
Alignment:
| Q |
39 |
tgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatggcactcaaatctgctgtggaactaggcata |
138 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| ||||||||| |||||| |||| | | |||||||||||||||||| || |||||||||||||| |
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|
| T |
34783870 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggcactcaaatcagccatggaactaggcata |
34783969 |
T |
|
| Q |
139 |
gctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaaagttagtgtcctttatcgtctct |
238 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |||| ||||| ||| |
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|
| T |
34783970 |
gctgatgcaatccataaccatggaaaaccaatgactctttctgaattagcctcatctttaaaactccacccttctaaagttaacatcctctatcgattct |
34784069 |
T |
|
| Q |
239 |
tgcgcttgctaacacacaatggtttctttgcaaaaacaaca |
279 |
Q |
| |
|
| ||| | ||||||||||||| |||||| ||||||||||| |
|
|
| T |
34784070 |
tacgccttttaacacacaatggcttctttacaaaaacaaca |
34784110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 39 - 277
Target Start/End: Original strand, 34775649 - 34775887
Alignment:
| Q |
39 |
tgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatggcactcaaatctgctgtggaactaggcata |
138 |
Q |
| |
|
|||||||||| | || |||||||||||||||||||| ||||||||| |||||| |||| | | ||||||||| |||||||| || |||||||||||||| |
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|
| T |
34775649 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaactaggcata |
34775748 |
T |
|
| Q |
139 |
gctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaaagttagtgtcctttatcgtctct |
238 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||| | | ||| | || ||| |
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|
| T |
34775749 |
gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatctttgaaacttcacccttctaaagttaatatacttcaccgattct |
34775848 |
T |
|
| Q |
239 |
tgcgcttgctaacacacaatggtttctttgcaaaaacaa |
277 |
Q |
| |
|
| ||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
34775849 |
tacgccttttaacacataatggtttctttgcaaaaacaa |
34775887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 1692 - 1974
Alignment:
| Q |
16 |
atggatttcattagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatttatacaaacatatatacagctttataaattccatggcactca |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| || ||||| |||||||||||| | ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1692 |
atggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcactca |
1791 |
T |
|
| Q |
116 |
aatctgctgtggaactaggcatagctgatgcaatccacaaccagggaaaaccaatgactcttactgaattagcctcatctttgaaactccacccttcgaa |
215 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
1792 |
aatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccacccttctaa |
1891 |
T |
|
| Q |
216 |
agttagtgtcctttatcgtctcttgcgcttgctaacacacaatggtttctttgcaaaaacaacactgatgaatggcaaagaag |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
1892 |
agttagtgtcctttatcgtctcttgcgcttgctaacacacaatggtttctttgcgaaaacaacactgatgagtggcaaagaag |
1974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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