View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2024_low_18 (Length: 282)
Name: NF2024_low_18
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 19338617 - 19338869
Alignment:
| Q |
18 |
cataattattgtattatgtataaaatagattccaaacagctgtcatcgtggtttttggaatcggccctctacctctacgcattgctatttggggattata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19338617 |
cataattattgtattatgtataaaatagattccaaacagctgtcatcgtggtttttggaatcggccctctacctctacgcattgctatttggggattata |
19338716 |
T |
|
| Q |
118 |
gtgagattttgtttttaacttgaaggttaatgtgaagttcaattcaaggatggaacatctagatgagttttaagaaaacttgtttcttgatcacactgtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19338717 |
gtgagattttgtttttaacttgaaggttaatgtgaagttcaattcaaggatggaacatctagatgagttttaagaaaacttgtttcttgatcacactgtc |
19338816 |
T |
|
| Q |
218 |
acttgaatcaatcaattatggttacttgaagacaaaattttaaaacttatatt |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19338817 |
acttgaatcaatcaattatggttacttgaagacaaaattttaaaacttatatt |
19338869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 18010555 - 18010699
Alignment:
| Q |
121 |
agattttgtttttaacttgaaggttaatgtgaagttcaattcaaggatggaacatctagatgagttttaagaaaacttgtttcttgatcacactgtcact |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18010555 |
agattttgtttttaacttgaaggttaatgttaagttcaattcaaggatggaacatctagatgagatttaagaaaacttgtttctcgatcacactgtcact |
18010654 |
T |
|
| Q |
221 |
tgaatcaatcaattatggttacttgaagacaaaattttaaaactt |
265 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||||| |
|
|
| T |
18010655 |
tgaatcaatcaattatggtcaattcaagacaaaattttaaaactt |
18010699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 19417470 - 19417526
Alignment:
| Q |
207 |
atcacactgtcacttgaatcaatcaattatggttacttgaagacaaaattttaaaac |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
19417470 |
atcacactgtcacttgaatcaatcaattatggtcacttcaggacaaaattttaaaac |
19417526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 18019202 - 18019248
Alignment:
| Q |
217 |
cacttgaatcaatcaattatggttacttgaagacaaaattttaaaac |
263 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
18019202 |
cacttgaatcaatcaattatggtcacttcaagacaaaattttaaaac |
18019248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 19323716 - 19323797
Alignment:
| Q |
121 |
agattttgtttttaacttgaaggttaatgtgaagttcaattcaaggatggaacatctagatgagttttaagaaaacttgttt |
202 |
Q |
| |
|
|||||||||||| || |||| |||| |||| ||||||||||||||||||||||| |||||| | |||| ||||||| |||| |
|
|
| T |
19323716 |
agattttgttttgaagttgatggttcatgtttagttcaattcaaggatggaacatatagatgggatttacgaaaactggttt |
19323797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 19379465 - 19379511
Alignment:
| Q |
217 |
cacttgaatcaatcaattatggttacttgaagacaaaattttaaaac |
263 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||||||||||||||| |
|
|
| T |
19379465 |
cacttgaatcattcaattatggtcacttcaagacaaaattttaaaac |
19379511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 263
Target Start/End: Original strand, 17947784 - 17947840
Alignment:
| Q |
207 |
atcacactgtcacttgaatcaatcaattatggttacttgaagacaaaattttaaaac |
263 |
Q |
| |
|
||||| ||| |||||||||||| ||| ||||| |||| |||||||||||||||||| |
|
|
| T |
17947784 |
atcacgctgccacttgaatcaacaaataatggtcacttcaagacaaaattttaaaac |
17947840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University