View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_19 (Length: 269)
Name: NF2024_low_19
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 48754685 - 48754939
Alignment:
| Q |
1 |
taaacattattattattttttgggtgaaaccaataacattaaccttgatctgagacatgaattgtcttagcgtgtcattggtgctttttcgaagttctaa |
100 |
Q |
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| T |
48754685 |
taaacattattattattttttgggtgaaaccattaacattaaccttgatctgagacatgaattgtcttagcgtgtcattggtgctttttcgaagttctaa |
48754784 |
T |
|
| Q |
101 |
ggttttgtttaaaaaccgttttttatatgccgaaagtattggacggtcttactacacttcttgttttttatttctttcttgcacatgaggttaccctcat |
200 |
Q |
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| T |
48754785 |
ggttttgtttaaaaaccgttttttatatgtcgaacgtattggacggtcttactacatttcttgttttttatttctttcttacacatgaggttaccctcat |
48754884 |
T |
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| Q |
201 |
attctccccattgtaatttcctttcctctgacggtatttgttttcttattctgtg |
255 |
Q |
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| T |
48754885 |
attctccccattgtaatttcctttcctctgacggtatttgttttcttattttgtg |
48754939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 52090927 - 52090699
Alignment:
| Q |
19 |
tttgggtgaaaccaat-aacattaaccttgatctgagacatgaattgtcttagcgtgtcattggtgctttttcgaagttctaaggttttgtttaaaaacc |
117 |
Q |
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| T |
52090927 |
tttgggtgaaaccatttaacattaaccttgatctgagacatggattgttttagcatgtcattggtgctttttcaatgttttaaggttttgtttaaaagcc |
52090828 |
T |
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| Q |
118 |
gttttttatatgccgaaagtattggacggtcttactacacttcttgttttttatttctttcttgcacatgaggttaccctcatattctccccattgtaat |
217 |
Q |
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| T |
52090827 |
-atttttatacgccg-aagtattggacggtctttctacatttcttgtttttaaattctttct--cgcatgatgttaccctcgtgttctcctcattgtaat |
52090732 |
T |
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| Q |
218 |
ttcctttcctctgacggtatttgttttcttatt |
250 |
Q |
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| T |
52090731 |
ttccttccctctgacagtatttgttttcttatt |
52090699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 38463172 - 38463245
Alignment:
| Q |
171 |
tttctttcttgcacatgaggttaccctcatattctccccattgtaatttcctttcctctgacggtatttgtttt |
244 |
Q |
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| T |
38463172 |
tttctttcttgaacacaaggatgccctcatatcctccccattgtaatttccttctctctgacagtattagtttt |
38463245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 38463009 - 38463142
Alignment:
| Q |
38 |
attaaccttgatctgagacatgaattgtcttagcgtgtcattggtgctttttcgaagttctaaggttttgtt---taaaaaccgttttttatatgccgaa |
134 |
Q |
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|||||| ||| | |||| ||||| |||| ||||| | || ||||||||| ||||||||| ||||| | |||| | |||||| ||||||||| |||||| |
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| T |
38463009 |
attaactttggtttgaggcatgatttgttttagcatatctttggtgcttgttcgaagttttaaggctgtgttgtgttaaaaccattttttataagccgaa |
38463108 |
T |
|
| Q |
135 |
agtattggacggtcttactacacttcttgtttttt |
169 |
Q |
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|||||| |||||||| || || |||||||||||| |
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| T |
38463109 |
-gtattgaacggtctttcttcatttcttgtttttt |
38463142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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