View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_2 (Length: 502)
Name: NF2024_low_2
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 28937302 - 28937532
Alignment:
| Q |
18 |
tcaccttcttccttttttagggatttgtatgattgagcattcgctgaatatataataatgatttaattttttggagctgattttctatatccagctgatg |
117 |
Q |
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| T |
28937302 |
tcaccttcttccttttttagggatttgtatgattgagcattcgctgaatatataataatgatttaattttttggagctgattttctatatccagctgatg |
28937401 |
T |
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| Q |
118 |
catccttttttaagtcatcccggtatgaatttatttatgtataagatatgagctagcttgatgcatggtaaattatgtctctaatactggatgctacaga |
217 |
Q |
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| T |
28937402 |
catccttttttaagtcatcccggtatgaatttatttatgtataagatatgagctagcttgatgcatggtaaattatgtctctaatactggatgctacaga |
28937501 |
T |
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| Q |
218 |
ttctaattgtcaatacttagatcatgtctct |
248 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28937502 |
ttctaattgtcaatacttagatcatgtctct |
28937532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 294 - 493
Target Start/End: Original strand, 28937578 - 28937776
Alignment:
| Q |
294 |
gggatggttgcactcattgtctttcatgattgcggtattcttaagcactaggccatgctcaacagtgttcaatcgtctcagggttatctatatctaactt |
393 |
Q |
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| T |
28937578 |
gggatggttgcactcattgtctttcatgattgcggtattcttaagcactaggccatgctcaacagtgttcaatcgtctcagggttatctatatctaactt |
28937677 |
T |
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| Q |
394 |
cnnnnnnnnnnnnnnnnnnttacatctctatttctcctttttctttctttcaattcgttcagaagtacataatcttgttaaaaatattgactcgtctgtg |
493 |
Q |
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| T |
28937678 |
c-aaaaaacttaaaaaaaattacatctctatttctcctttttctttctttcaattcgttcagaagtacataatcttgttaaaaatattgactcgtctgtg |
28937776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 35117143 - 35117089
Alignment:
| Q |
138 |
cggtatgaatttatttatgtataagatatgagctagcttgatgcatggtaaattatg |
194 |
Q |
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||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
35117143 |
cggtaagaattcatttttgtataagat--gagctagcttgatgcatggtaaattatg |
35117089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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