View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_21 (Length: 255)
Name: NF2024_low_21
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_21 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 31024251 - 31024494
Alignment:
| Q |
12 |
acagacataaaaagaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaacaatgtcataatg |
111 |
Q |
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| T |
31024251 |
acagacataaaaagaggattgatgttcaatttcctatcagacaacttgttctaaatatccaaaattgaacaagttcaaaggtctaaacaatgtcataatg |
31024350 |
T |
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| Q |
112 |
tgctgaatataactacattcagtctaggttaccatatatcatcacacaactgaaaaaggatgacaacccttagttcatgtacaaaagcatcaaaccatag |
211 |
Q |
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| T |
31024351 |
tgctgaatataactacattcagtctaggttatcatatatcatcacacaactgaaaaaggatgacaacccttagttcatgtacaaaagcatcaaaccatag |
31024450 |
T |
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| Q |
212 |
agtactcttaccaacactgggattactaccaactaaagtcgata |
255 |
Q |
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| T |
31024451 |
agtactcttaccaacactgggattactaccaactaaagtcgata |
31024494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 31071359 - 31071494
Alignment:
| Q |
11 |
cacagacataaaaagaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaacaatgtcataat |
110 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |
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| T |
31071359 |
cacagacatcaaaagaggattgatgttcaattttctatcagacaacttgttctaaatt--caaaattgaacaagttcaaaggtctaaacaatatcataat |
31071456 |
T |
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| Q |
111 |
gtgctgaatataactacattcagtctaggttaccatat |
148 |
Q |
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| T |
31071457 |
gtggtgaatataactacagtcagtccaggttaccatat |
31071494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 31027859 - 31027966
Alignment:
| Q |
11 |
cacagacataaaaagaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaacaatgtcataat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||| |
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| T |
31027859 |
cacagacataaaaagaggattgatgttcaatttcctatcaaacaacttgttctatatatccaaaatcgaacaagttcaaaggtcaaaacaatgtcataat |
31027958 |
T |
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| Q |
111 |
gtgctgaa |
118 |
Q |
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|||||||| |
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| T |
31027959 |
gtgctgaa |
31027966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 31072332 - 31072383
Alignment:
| Q |
142 |
accatatatcatcacacaactgaaaaaggatgacaacccttagttcatgtac |
193 |
Q |
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| T |
31072332 |
accatatatcatcacacaactgaaaaaggatgacaaaccttagttcatgtac |
31072383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 174
Target Start/End: Original strand, 31030278 - 31030315
Alignment:
| Q |
137 |
aggttaccatatatcatcacacaactgaaaaaggatga |
174 |
Q |
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| T |
31030278 |
aggttaccatatatcatcacacaagtgaaaaaggatga |
31030315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 21217281 - 21217209
Alignment:
| Q |
24 |
agaggattgatgttcaatttcctatcagacagcttgttctaaatatccaaaattgaacaagtttaaaggtctaaa |
98 |
Q |
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|||| |||||||||||||||||| ||| ||| ||| |||||| |||||||||| |||||||| |||| |||||| |
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| T |
21217281 |
agagcattgatgttcaatttcctctcaaacatcttattctaa--atccaaaatttaacaagttcaaagttctaaa |
21217209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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