View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2024_low_22 (Length: 250)
Name: NF2024_low_22
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_22 |
 | |
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| [»] chr1 (4 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
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|
| [»] chr4 (3 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 6208708 - 6208860
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6208708 |
tgtttattcataggaaattggggaagaaaatatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
6208807 |
T |
|
| Q |
187 |
taccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaag |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6208808 |
taccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaag |
6208860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 29409741 - 29409801
Alignment:
| Q |
89 |
tttattcataggaaattggggaagaaaacatgggtatattggt-aactatacatgtcattg |
148 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29409741 |
tttattcataggaaattgtagaataaaacatgggtatattggtaaactatacttgtcattg |
29409801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 45709299 - 45709136
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
186 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45709299 |
tgtttattcatgggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaa |
45709200 |
T |
|
| Q |
187 |
taccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaagtgcttttcatt |
250 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45709199 |
taccagcttctgttgtactggccttttgagatcaaaactgagtttcctgaaagcacttttcatt |
45709136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 6464079 - 6463971
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| || |
|
|
| T |
6464079 |
tgtttattcataggaaattggggaagaaaacataggtatattggtaactatacatgtcattgtaatcaaaactgagtttctcaaaagcagaagctagaaa |
6463980 |
T |
|
| Q |
187 |
taccagctt |
195 |
Q |
| |
|
||||||||| |
|
|
| T |
6463979 |
taccagctt |
6463971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 40821266 - 40821132
Alignment:
| Q |
101 |
aaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaataccagcttctgtt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||| ||| || |||||||||||||||| ||| |
|
|
| T |
40821266 |
aaattggagaagaaaacatgggtatattggtaactatacatgtcattgaaatgaaaatcgagtttcccaaacgcaatagctaggaataccagcttcagtt |
40821167 |
T |
|
| Q |
201 |
gtactggctttttgagatcaaaactgagtttcctg |
235 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| |
|
|
| T |
40821166 |
gtacacgcgttttgagatcaaaactgagtttcctg |
40821132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 12467798 - 12467737
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattg |
148 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12467798 |
tgtttattcatgggaaattggagaagaaaacatgggtatattggtaactatacttgtcattg |
12467737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 44940075 - 44940234
Alignment:
| Q |
91 |
tattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaatacc |
190 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44940075 |
tattcataagaaattggggaagaaaacatggatatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaatacc |
44940174 |
T |
|
| Q |
191 |
agcttctgttgtactggctttttgagatcaaaactgagtttcctgaaagtgcttttcatt |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44940175 |
agcttctgttgtactgactttttgagatcaaaactgagtttcctgaaagcacttttcatt |
44940234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 99 - 250
Target Start/End: Original strand, 8426441 - 8426592
Alignment:
| Q |
99 |
ggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaataccagcttctg |
198 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| ||||||| || |||| | |
|
|
| T |
8426441 |
ggaaattggagaagaaaagatggatatattggtaactatacatgtcatttaaatcaaaaccgagtttcacaaactcagaagctaggaattcctgctttag |
8426540 |
T |
|
| Q |
199 |
ttgtactggctttttgagatcaaaactgagtttcctgaaagtgcttttcatt |
250 |
Q |
| |
|
||||| ||| |||||| |||||||||||||| || ||| |||||||||| |
|
|
| T |
8426541 |
ctgtaccggcgttttgatctcaaaactgagttttttggaagcgcttttcatt |
8426592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 30812171 - 30812271
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
186 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||||| |||||||||||||||||||| | |||||||||| ||||||||||| ||| ||| |||||| |
|
|
| T |
30812171 |
tgtttattattaggaaattggagaagaaaatataggtatgttggtaactatacatgtcatagaaatcaaaactcagtttcacaaacgcaaaagctaggaa |
30812270 |
T |
|
| Q |
187 |
t |
187 |
Q |
| |
|
| |
|
|
| T |
30812271 |
t |
30812271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 35424807 - 35424707
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
186 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||| || |||||||| || ||| ||| |||||| |
|
|
| T |
35424807 |
tgtttattactaggaaattggagaagaaaacatgagtatattggtaactatacatgtcatagaaatcaaatctcagtttcaccaacgcaaaagctaggaa |
35424708 |
T |
|
| Q |
187 |
t |
187 |
Q |
| |
|
| |
|
|
| T |
35424707 |
t |
35424707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 53179413 - 53179352
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattg |
148 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53179413 |
tgtttattcatgggaaattggagaagaaaacatgggtatattggtaactatacttgtcattg |
53179352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 36122204 - 36122356
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
186 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
36122204 |
tgtttattcataagaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaattgagtttcacaaaagcagaagttaagaa |
36122303 |
T |
|
| Q |
187 |
taccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaag |
239 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
36122304 |
taccagcttctgttgtattggcgttttgagatcaaaactgagtttcctgaaag |
36122356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 32238766 - 32238928
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
186 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32238766 |
tgtttattcataggaaattggg-aagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaa |
32238864 |
T |
|
| Q |
187 |
taccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaagtgcttttcatt |
250 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
32238865 |
taccagcttctgttgtactgtcgttttgagatcaaaactgagttttctgaaagcacttttcatt |
32238928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 54152438 - 54152321
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
54152438 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatatatgtcattgtaatcaaaactgagtttcacaaaagcagaagctaggaa |
54152339 |
T |
|
| Q |
187 |
taccagcttctgttgtac |
204 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
54152338 |
taccaacttctgttgtac |
54152321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 14071934 - 14071779
Alignment:
| Q |
97 |
taggaaattggggaagaaaacatggg--tatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaataccagct |
194 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
14071934 |
taggaaattggagaagaaaacatgggggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaagcagaagctatgaatatcagct |
14071835 |
T |
|
| Q |
195 |
tctgttgtactggctttttgagatcaaaactgagtttcctgaaagtgcttttcatt |
250 |
Q |
| |
|
|| |||||| |||| ||||||||||||||| |||||||| || | ||||||||| |
|
|
| T |
14071834 |
tcagttgtaatggcgttttgagatcaaaaccacgtttcctggaattacttttcatt |
14071779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 40262144 - 40262307
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40262144 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaaactaggaa |
40262243 |
T |
|
| Q |
187 |
taccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaagtgcttttcatt |
250 |
Q |
| |
|
||||||||| |||||||||| | ||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
40262244 |
taccagcttatgttgtactgacgttttgagatcaaaactgagtttcctgatagcacttttcatt |
40262307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 14820575 - 14820408
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggta----tattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagtta |
182 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | | || |
|
|
| T |
14820575 |
tgtttattcatagaaaattggggaagaaaacatgggtacgtatattggtaactatacatgtcattgtaatcaaaattgagtttcacaaaagcatatgcta |
14820476 |
T |
|
| Q |
183 |
ggaataccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaagtgcttttcatt |
250 |
Q |
| |
|
|||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
14820475 |
ggaatatcagcttctgttgcactggcgttttgagatcaaaactgagtttcccgaaagcacttttcatt |
14820408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 33954556 - 33954719
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaa |
186 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || | | |
|
|
| T |
33954556 |
tgtttattagtaggaaattgaagaagaaaacatgggtatattggtaactatacatgtcattgaaatcaaaactgagtttcacaaaagcagaagctatgga |
33954655 |
T |
|
| Q |
187 |
taccagcttctgttgtactggctttttgagatcaaaactgagtttcctgaaagtgcttttcatt |
250 |
Q |
| |
|
|| ||||||| |||||| ||| ||||||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
33954656 |
tatcagcttcagttgtaatggtgttttgagatcaaaaccacgtttcctggaagtacttttcatt |
33954719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 2430946 - 2431078
Alignment:
| Q |
99 |
ggaaattggggaagaaaacatgggtatattggtaactatacatgtcattgtaatcaaaactgagtttcacaaaagcagaagttaggaataccagcttctg |
198 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||| ||||||| || |||| | |
|
|
| T |
2430946 |
ggaaattggagaagaaaagatgggtatattggtaactatagatgtcatttaaatcaaaaccgagtttcacaaactcagaagctaggaattcctgctttag |
2431045 |
T |
|
| Q |
199 |
ttgtactggctttttgagatcaaaactgagttt |
231 |
Q |
| |
|
||||| ||| ||||| |||||||||||||| |
|
|
| T |
2431046 |
ctgtaccggcgttttggtctcaaaactgagttt |
2431078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 40495880 - 40495941
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattg |
148 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40495880 |
tgtttattcatgggaaattggagaagaaaacatgggtatattggtaactatacttgtcattg |
40495941 |
T |
|
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Target: scaffold0018 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 193264 - 193204
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcatt |
147 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
193264 |
tgtttattcatgggaaattggagaagaaaacatgggtatattggtaattatacttgtcatt |
193204 |
T |
|
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 1554339 - 1554278
Alignment:
| Q |
87 |
tgtttattcataggaaattggggaagaaaacatgggtatattggtaactatacatgtcattg |
148 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
1554339 |
tgttaattcatagaaaattggagaagaaaacatgggtatattggtaactatacttttcattg |
1554278 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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