View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_25 (Length: 238)
Name: NF2024_low_25
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 47570163 - 47569941
Alignment:
| Q |
1 |
agattcattcacctcccacccatcacccactgtatatatagggtccatagtaagagacactacacttattcttttcactcttaaaattgtttggagaact |
100 |
Q |
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| T |
47570163 |
agattcattcacctcccacccatcacccactatatatatagggaccatagtaagagacactacacttattcttttcactcttaaaattgtttggagaact |
47570064 |
T |
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| Q |
101 |
gaggaaagggtgaagtaagagatggcttactacaatcaaaatcctcctgcggttaacgttaacgtttctggtccacctcctgcacaaggtgctcaaacaa |
200 |
Q |
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| T |
47570063 |
gagaaaagggtgaagtaagagatggcttactacaatcaaaatcctcctgcggttaacgttaacgtttctggtccaccacctgcacaaggtgctcaaacaa |
47569964 |
T |
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| Q |
201 |
atccatctaattaccatgatttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
47569963 |
atccatctaattaccatgatttt |
47569941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 47575081 - 47574971
Alignment:
| Q |
119 |
gagatggcttactacaatcaaaa---tcctcctgcggttaacgttaacgtttctggtccacctcct---gcacaaggt--gctcaaacaaatccatctaa |
210 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
47575081 |
gagatggcttactacaatcaaaacactcctcctgctattaacgttaacgtttctggtccacctcctccaccacaaggttctctcaaacaaatccatctaa |
47574982 |
T |
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| Q |
211 |
ttaccatgatt |
221 |
Q |
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||||| ||||| |
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| T |
47574981 |
ttaccttgatt |
47574971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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