View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_3 (Length: 498)
Name: NF2024_low_3
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_3 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 170 - 484
Target Start/End: Original strand, 31966203 - 31966517
Alignment:
| Q |
170 |
tattgtgatgtccgcattgtgtatgttttatttgtactttgtatttggtctatgcaacactagccaatttatgttttatcttctttgatttattatttct |
269 |
Q |
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| T |
31966203 |
tattgtgatgtccgcattgtgtatgttttatttgtactttgtatttggtctatgcaacactagccaatttatgttttatcttctttgatttattatttct |
31966302 |
T |
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| Q |
270 |
aatatcattgtttgtgttttctaaatgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggtcaac |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31966303 |
aatatcattgtttgtgttttctaaatgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattggatcaac |
31966402 |
T |
|
| Q |
370 |
tatatggaactgctgcatattatataacaacgattttggaaggcgataatttttctacaaattcattttactactatgcatactacattggagcaaattt |
469 |
Q |
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| T |
31966403 |
tatacggaactgctgcatattatataacaacgattttggaaggcgataatttttctacaaattcattttactactatgcatactacattggagcaaattt |
31966502 |
T |
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| Q |
470 |
ctcttggattgtatt |
484 |
Q |
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||||||||||||||| |
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| T |
31966503 |
ctcttggattgtatt |
31966517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 235 - 481
Target Start/End: Original strand, 31959281 - 31959524
Alignment:
| Q |
235 |
aatttatgttttatcttctttgatttattatttctaatatcattgtttgtgttttctaaatgtatgacagatatgcaatagctactgggaaatcatacag |
334 |
Q |
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| T |
31959281 |
aatttatgttttatctt---tgatttttcatttttaatctcactgtttgtattttcttaatgtatgacagatatgcaatagctactgggaaatcatacag |
31959377 |
T |
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| Q |
335 |
ctatatacttcaatttgccgtttcattgggtcaactatatggaactgctgcatattatataacaacgattttggaaggcgataatttttctacaaattca |
434 |
Q |
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| T |
31959378 |
ctacatccttcaatttgccgtttcattgggtcagctatatggaactgcaacatattatataacagcgattttggaaggcgataatttttctacaaattca |
31959477 |
T |
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| Q |
435 |
ttttactactatgcatactacattggagcaaatttctcttggattgt |
481 |
Q |
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| T |
31959478 |
ttttactactatgcatattacattggagcaaatttctcttggattgt |
31959524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 31966108 - 31966204
Alignment:
| Q |
1 |
tatgctgcaagggatgcagtgatcgaaactgttgaaggactaacaacagttttggagggtccagctagtcttctggccgtgtaaattaaactcctta |
97 |
Q |
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| T |
31966108 |
tatgctgcaagggatgcaccgatcgaaactgttgaaggactaacaacagttttggagggtccagctagtcttctgaccgtgtaaattaaactcctta |
31966204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 245 - 367
Target Start/End: Complemental strand, 20981811 - 20981688
Alignment:
| Q |
245 |
ttatcttctttgatttattatttctaatatcattgtttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatact |
343 |
Q |
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||||||||||||| |||| |||| |||| ||| ||||||||||||||| ||| |||||| |||||||||||||||| |||||||||| || || ||||| |
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| T |
20981811 |
ttatcttctttgaattatcatttttaatctcacagtttgtgttttctaatatggatgacaaatatgcaatagctactaggaaatcatagagttacatact |
20981712 |
T |
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| Q |
344 |
tcaatttgccgtttcattgggtca |
367 |
Q |
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|||| ||||| |||| |||||||| |
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| T |
20981711 |
tcaacttgccatttctttgggtca |
20981688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 31958828 - 31958890
Alignment:
| Q |
29 |
ctgttgaaggactaacaacagttttggagggtccagctagtcttctggccgtgtaaattaaac |
91 |
Q |
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| T |
31958828 |
ctgttgaaggactaacagcagttttggagggcccagccagtcttctggccgtgtaagttaaac |
31958890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 365
Target Start/End: Complemental strand, 20971348 - 20971281
Alignment:
| Q |
298 |
atgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
365 |
Q |
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| T |
20971348 |
atgacaaatatgcaatagctactaggaaatcatacatatacatacttcaatttgccgtttctttgggt |
20971281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 20973566 - 20973509
Alignment:
| Q |
310 |
caatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggtca |
367 |
Q |
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| T |
20973566 |
caatagctactaggaaatcatacagctacatacttcaatttgttgtttctttgggtca |
20973509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 30371 - 30457
Alignment:
| Q |
280 |
tttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
365 |
Q |
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| T |
30371 |
tttgttttttctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggt |
30457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 41403964 - 41403878
Alignment:
| Q |
280 |
tttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
365 |
Q |
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||||| |||||||| ||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
41403964 |
tttgttttttctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggt |
41403878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 7215 - 7135
Alignment:
| Q |
286 |
ttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
365 |
Q |
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|||||||| ||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
7215 |
ttttctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggt |
7135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 353
Target Start/End: Original strand, 13445768 - 13445892
Alignment:
| Q |
235 |
aatttatgttttatcttctttgatttattatttc-----taatatcattgtttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatc |
328 |
Q |
| |
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|||||||||||||||| |||| ||||||| |||| |||| ||||||||||||||||| || || || |||||||||| ||| |||| | |||||| |
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| T |
13445768 |
aatttatgttttatctacttttatttattctttcatttttaatctcattgtttgtgttttcaaatataaataacagatatgcgataactaccgtgaaatc |
13445867 |
T |
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| Q |
329 |
atacagctatatacttcaatttgcc |
353 |
Q |
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||||||||| ||||||||||||||| |
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| T |
13445868 |
atacagctacatacttcaatttgcc |
13445892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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