View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2024_low_30 (Length: 214)

Name: NF2024_low_30
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2024_low_30
NF2024_low_30
[»] chr4 (11 HSPs)
chr4 (13-167)||(6737569-6737723)
chr4 (16-189)||(6543060-6543233)
chr4 (56-113)||(6503166-6503223)
chr4 (56-149)||(6506673-6506766)
chr4 (41-153)||(6594013-6594125)
chr4 (48-194)||(6646103-6646249)
chr4 (162-197)||(6736107-6736142)
chr4 (49-108)||(6747960-6748019)
chr4 (50-151)||(6791463-6791564)
chr4 (41-102)||(6810770-6810831)
chr4 (48-84)||(6523888-6523924)
[»] scaffold0729 (1 HSPs)
scaffold0729 (50-151)||(7065-7166)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 6737723 - 6737569
Alignment:
Q  13 caaaggtaaaacaatgggaccatctttagttcggtaacactcagttattttctccaattcttgaagacaccatctagaattagtataattctttgataat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6737723 caaaggtaaaacaatgggaccatctttagttcggtaacactcagttattttctccaattcttgaagacaccatctagaattagtataattctttgataat 6737624  T
Q  113 acgactacaaaaactttgcaatcttcaatcacattcagcaccgaggtagatattt 167  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6737623 acgactacaacaactttgcaatcttcaatcacattcagcaccgaggtagatattt 6737569  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 6543060 - 6543233
Alignment:
Q  16 aggtaaaacaatgggaccatctttagttcggtaacactcagttattttctccaattcttgaagacaccatctagaattagtataattctttgataatacg 115  Q
    ||||||||||| |||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |    
T  6543060 aggtaaaacaacgggaccatctttggttcggtaacactgggttattttctccaattcttgaagacaccatctagaatgcgtataattctttgataatatg 6543159  T
Q  116 actacaaaaactttgcaatcttcaatcacattcagcaccgaggtagatatttctcgatctccacttccaatcct 189  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||| | || |||| ||||||||  |||||||||    
T  6543160 actacaacaactttggaatctgcaatcacattcagcaccgaggttggtacttcttgatctccaaatccaatcct 6543233  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 6503166 - 6503223
Alignment:
Q  56 gttattttctccaattcttgaagacaccatctagaattagtataattctttgataata 113  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  6503166 gttattttctccaattcttgaagacaccatcttgatttagtataattctttgaaaata 6503223  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 6506673 - 6506766
Alignment:
Q  56 gttattttctccaattcttgaagacaccatctagaattagtataattctttgataatacgactacaaaaactttgcaatcttcaatcacattca 149  Q
    |||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||| | |||||  | || ||||||| |||| |||||||    
T  6506673 gttattttctccaattcttgaagacaccatcttgaattaaaataattctttgaaaatacaattacaactatttcgcaatctccaataacattca 6506766  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 6594013 - 6594125
Alignment:
Q  41 gttcggtaacactcagttattttctccaattcttgaagacaccatctagaattagtataattctttgataatacgactacaaaaactttgcaatcttcaa 140  Q
    |||||| |||||| ||||||||||||||||||||| | |||| | || |||||||||||||| ||||| || | |||||||   |||||||| |||| ||    
T  6594013 gttcggcaacactgagttattttctccaattcttgtatacacgaacttgaattagtataattttttgaaaacaagactacagcgactttgcagtcttgaa 6594112  T
Q  141 tcacattcagcac 153  Q
    | |||||||||||    
T  6594113 ttacattcagcac 6594125  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 194
Target Start/End: Complemental strand, 6646249 - 6646103
Alignment:
Q  48 aacactcagttattttctccaattcttgaagacaccatctagaattagtataattctttgataatacgactacaaaaactttgcaatcttcaatcacatt 147  Q
    ||||||| ||||| ||||| ||||||||||||||| |||| ||||||  ||||||  |||| ||||| | ||||  ||||||||||||||| || |||||    
T  6646249 aacactcggttatcttctcaaattcttgaagacacgatcttgaattaacataatttcttgaaaatactattacagcaactttgcaatcttctataacatt 6646150  T
Q  148 cagcaccgaggtagatatttctcgatctccacttccaatcctctcat 194  Q
    ||  |  ||||| | |||| ||||||| || ||||||| | ||||||    
T  6646149 caaaattgaggttggtattcctcgatcaccgcttccaagcttctcat 6646103  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 6736142 - 6736107
Alignment:
Q  162 atatttctcgatctccacttccaatcctctcattgt 197  Q
    ||||||||||||||||||||||||||||||||||||    
T  6736142 atatttctcgatctccacttccaatcctctcattgt 6736107  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 6748019 - 6747960
Alignment:
Q  49 acactcagttattttctccaattcttgaagacaccatctagaattagtataattctttga 108  Q
    |||||||||||||||||||||||| ||||||||||| || || | |||||| ||||||||    
T  6748019 acactcagttattttctccaattcctgaagacaccagcttgattcagtatatttctttga 6747960  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 6791564 - 6791463
Alignment:
Q  50 cactcagttattttctccaattcttgaagacaccatctagaattagtataattctttgataatacgactacaaaaactttgcaatcttcaatcacattca 149  Q
    |||| ||||||||||||||||||||| | |||| | || || |||| |||||| ||||| ||||| |||| || || |||||| |||| ||| |||||||    
T  6791564 cacttagttattttctccaattcttgtatacacgaactcgagttagcataattttttgaaaatactactataacaattttgcagtcttgaattacattca 6791465  T
Q  150 gc 151  Q
    ||    
T  6791464 gc 6791463  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 6810831 - 6810770
Alignment:
Q  41 gttcggtaacactcagttattttctccaattcttgaagacaccatctagaattagtataatt 102  Q
    |||||| |||| || |||||||||||||||||||||||||||| | | ||||||| ||||||    
T  6810831 gttcggcaacattcggttattttctccaattcttgaagacaccgtgttgaattagcataatt 6810770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 6523888 - 6523924
Alignment:
Q  48 aacactcagttattttctccaattcttgaagacacca 84  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  6523888 aacactcggttattttctcgaattcttgaagacacca 6523924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0729 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 7065 - 7166
Alignment:
Q  50 cactcagttattttctccaattcttgaagacaccatctagaattagtataattctttgataatacgactacaaaaactttgcaatcttcaatcacattca 149  Q
    |||| ||||||||||||||||||||| | |||| | || || |||| |||||| ||||| ||||| |||| || || |||||| |||| ||| |||||||    
T  7065 cacttagttattttctccaattcttgtatacacgaactcgagttagcataattttttgaaaatactactataacaattttgcagtcttgaattacattca 7164  T
Q  150 gc 151  Q
    ||    
T  7165 gc 7166  T

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