View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_31 (Length: 206)
Name: NF2024_low_31
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 24793320 - 24793150
Alignment:
| Q |
17 |
gagagagcttagaattcaatattgtttattgaatggtactgtttctgatgaggttggtgaattgttgaatcttgagtatttggatttgtcctctaatgct |
116 |
Q |
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| T |
24793320 |
gagagagcttagaattcaatattgtttattgaatggtactgtttctgatgagattggtgaattgttgaatcttgagtatttggatttgtcttctaatact |
24793221 |
T |
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| Q |
117 |
atgtttccttcttggaaattgcctttgagtttgaccaagttgaacaaattgaaggttttttatgtttatgg |
187 |
Q |
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| T |
24793220 |
atgtttccttcttggaaattgcctttcagtttgaccaagttgaacaaattgaaggttctttatgtttatgg |
24793150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 31118474 - 31118520
Alignment:
| Q |
18 |
agagagcttagaattcaatattgtttattgaatggtactgtttctga |
64 |
Q |
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| T |
31118474 |
agagaacttataattcaatattgtttattgaatagtactgtttctga |
31118520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 50232240 - 50232170
Alignment:
| Q |
56 |
tgtttctgatgaggttggtgaattgttgaatcttgagtatttggatttgtcctctaatgcta-tgtttcctt |
126 |
Q |
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| T |
50232240 |
tgtttctgatgagattgatgaattgttgaat-ttgagtgtttggatttgtcctttaatgctactgtttcctt |
50232170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 42660238 - 42660283
Alignment:
| Q |
19 |
gagagcttagaattcaatattgtttattgaatggtactgtttctga |
64 |
Q |
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| T |
42660238 |
gagaacttataattcaatattgtttattgaatagtactgtttctga |
42660283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 19829186 - 19829298
Alignment:
| Q |
56 |
tgtttctgatgaggttggtgaattgttgaatcttgagtatttggatttgtcctctaatgcta-tgtttccttcttggaaattgcctttgagtttgaccaa |
154 |
Q |
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| T |
19829186 |
tgtttctgatgagattggtgaattgttgact-ttgagtgtttggatttgtcctttagtgctattgtttcct---------ttgcctttgagtttgcccag |
19829275 |
T |
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| Q |
155 |
gttgaacaaattgaaggtttttt |
177 |
Q |
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| T |
19829276 |
gttgaaaaaatttaaggtttttt |
19829298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 50053331 - 50053391
Alignment:
| Q |
56 |
tgtttctgatgaggttggtgaattgttgaatcttgagtatttggatttgtcctctaatgcta |
117 |
Q |
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| T |
50053331 |
tgtttctgatgagattggtgaattgttgaat-ttgagtgtttgaatttgtcctttaatgcta |
50053391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 50053675 - 50053629
Alignment:
| Q |
18 |
agagagcttagaattcaatattgtttattgaatggtactgtttctga |
64 |
Q |
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| T |
50053675 |
agagaacttataattcaatattgtttattgaatagtactgtttctga |
50053629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 7361703 - 7361574
Alignment:
| Q |
45 |
ttgaatggtactgtttctgatgaggttggtgaattgttgaatcttgagtatttggatttgtcctctaatgctatgtttccttcttggaaattgcctttga |
144 |
Q |
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| T |
7361703 |
ttgaatggtattgtttctgatgagatttgtaaattgtataat-ttgagtatctagatttgttcttcaatgctatgtttcgtt---------tgcctctga |
7361614 |
T |
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| Q |
145 |
gtttgaccaagttgaacaaattgaaggttttttatgttta |
184 |
Q |
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| T |
7361613 |
gtttgcccatgttgaacaaattgaaggtttttcatgttta |
7361574 |
T |
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