View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_4 (Length: 493)
Name: NF2024_low_4
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 43208847 - 43208370
Alignment:
| Q |
1 |
aaacacgcagacatatcacaaagcagaattcaaatggctggcaaataaagagcaagattgatgagtgccaaatgctatacctgactgattagaatttaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43208847 |
aaacacgcagacatatcacaaagcagaattcaaatggctggcaaataaagagcaagattgatgagtgccaaatgctatacctaactgattagaatttaga |
43208748 |
T |
|
| Q |
101 |
agtcacccatcccaaaactcgtgggcatcagaaaggttgaattcgagcaatgacactgtccatgaagataataaaaggtatattaagagacaaatcctat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43208747 |
agtcacccatcccaaaactcgtgggcatcagaaaggttgaatttgagcaatgacactgtccatgaagataataaaaggtatattaagagacaaatcctat |
43208648 |
T |
|
| Q |
201 |
cctctacatgcatatgatattttcatgtcctaatccacataaacagcttcaataccgagcatctccaatatcgacacaacaagcataaaattaccttgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43208647 |
cctctacatgcatatgatattttcatgtcctaatccacataaacagcttcaataccgagcatctccaatatcgacacaacaagcataaaattaccttgaa |
43208548 |
T |
|
| Q |
301 |
gaaagtctcagcagaactattgaattttcgtgataaatctcgtatccatatatacaaatatattatcaagcacgttaaataattgtcaaattatgatgat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43208547 |
gaaagtctcagcagaactattgaattttcgtgataaatctcgtatccatatatacaaatatattatcaagcacgttaaataattgtcaaattatgatgat |
43208448 |
T |
|
| Q |
401 |
gaagatttcaaaatttgtccaagtgtagagtccatgacctgatttccatcatgaaaattcaaaataagagatggtttc |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43208447 |
gaagatttcaaaatttgtccaagtgtagagtccatgacctgatttccatcatgaaaattcaaaataagagatggtttc |
43208370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 211 - 478
Target Start/End: Complemental strand, 43187888 - 43187622
Alignment:
| Q |
211 |
catatgatattttcatgtcctaatccacataaacagcttcaataccgag-catctccaatatcgacacaacaagcataaaattaccttgaagaaagtctc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||||||||||| | |
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| T |
43187888 |
catatgatattttcatgtcctaatccacataaacagcttcaataccttggcatctccaatatcaacaaaacaagcataaaattaccttgaagaaagtccc |
43187789 |
T |
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| Q |
310 |
agcagaactattgaattttcgtgataaatctcgtatccatatatacaaatatattatcaagcacgttaaataattgtcaaattatgatgatgaagatttc |
409 |
Q |
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||||| ||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43187788 |
agcagtgctactgaatttttgtgacaaatctcgtatccatatatacaaatacattatcaagcacgttaaataattgtcaaattatgatgatgaagatttc |
43187689 |
T |
|
| Q |
410 |
aaaatttgtccaagtgtagagtccatgacctgatttccatcatgaaaattcaaaataagagatggtttc |
478 |
Q |
| |
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||| |||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43187688 |
aaagtttgtctaagtacagtgtccatgac--gatttccatcatgaaaattcaaaataagagatggtttc |
43187622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 43188496 - 43188279
Alignment:
| Q |
1 |
aaacacgcagacatatcacaaagcagaattcaaatggctggcaaataaagagcaagattgatgagtgccaaatgctatacctgactgattagaatttaga |
100 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||| |||||||||||||||| |
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| T |
43188496 |
aaacacacagaagtatcacaaagttgaattcaaatggccggcaaataaagagcaagattgatgaggggcaaatgctacacctagctgattagaatttaga |
43188397 |
T |
|
| Q |
101 |
agtcacccatcccaaaactcgtgggcatcagaaaggttgaattcgagcaatgacactgtccatgaagataataaaaggtatattaagagacaaatcctat |
200 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43188396 |
agtcacccatcccaaaacatgcgggcatcagaaaggttgaattcgagcaatgaaactgtccatgaagataataaaaggcatattaagagacaaatcctat |
43188297 |
T |
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| Q |
201 |
cctctacatgcatatgat |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
43188296 |
cctctacatgcatatgat |
43188279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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