View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2024_low_5 (Length: 491)

Name: NF2024_low_5
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2024_low_5
NF2024_low_5
[»] chr5 (2 HSPs)
chr5 (19-484)||(20415526-20415978)
chr5 (50-486)||(9505409-9505844)
[»] chr4 (1 HSPs)
chr4 (50-486)||(16838792-16839227)
[»] chr2 (2 HSPs)
chr2 (52-294)||(45494995-45495236)
chr2 (52-294)||(45502737-45502978)
[»] chr6 (3 HSPs)
chr6 (50-215)||(368418-368583)
chr6 (257-331)||(368621-368695)
chr6 (426-486)||(368771-368831)
[»] chr1 (2 HSPs)
chr1 (220-276)||(30738199-30738255)
chr1 (389-487)||(30737995-30738093)
[»] scaffold0014 (1 HSPs)
scaffold0014 (50-277)||(62819-63045)


Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 20415978 - 20415526
Alignment:
Q  19 actatggttatcttctttctttttgatgtgtcattgtgttgtggagtgtagggagcagttacttcataatttatgccacttgataagaaaaagtccttaa 118  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20415978 actatggttattttctttctttttgatgtgccattgtgttgtggagtgtagggagcagttacttcataatttatgccacttgataagaaaaagtccttaa 20415879  T
Q  119 actcactagatgtatactcacctcttccatttgttcttaatttgccaatcattttaccattttcattctaaactagcattctaatcttcttaaacacttt 218  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20415878 actcactagatgtatacccacttcttccatttgttcttaatttgccaatcatttcaccattttcattctaaactagcattctaatcttcttaaacacttt 20415779  T
Q  219 gaaacacatcacttttcttggctttcaagtaaattcacaactttctagtaaattcatctatgaatgacgcaaagtagttgttacctcccagtgatttgac 318  Q
    |||||||||||||||||||||             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20415778 gaaacacatcacttttcttgg-------------tcacagctttctagtaaattcatctatgaatgacgcaaagtagttgttacctcccagtgatttgac 20415692  T
Q  319 atcaaatggtccataaacataatagtgaataacttcaagcttcctagtttctttaactggaattccagccttgtatgagcttcttgcttgttttctagtg 418  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  20415691 atcaaatgttccataaacataatagtgaataactacaagcttcctagtttctttaactggaattacaaccttgtatgagcttcttgcttgttttctagtg 20415592  T
Q  419 caacatttatcacatagttaactaggtagcttgatctgtggtaaccctttcaccattttcttctca 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20415591 caacatttatcacatagttaactaggtagcttgatctgtggtaaccctttcaccattttcttctca 20415526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 50 - 486
Target Start/End: Complemental strand, 9505844 - 9505409
Alignment:
Q  50 cattgtgttgtggagtgtagggagcagttacttcataatttatgccacttgataagaaaaagtccttaaactcactagatgtatactcacctcttccatt 149  Q
    |||||||||| || ||||| || ||||| ||||||| |||||||||| ||||| || ||||||| || |||||| | || ||||||||||||| |||||     
T  9505844 cattgtgttgaggtgtgtatggtgcagtgacttcatgatttatgccatttgatgagcaaaagtcattgaactcattggaagtatactcacctcctccatc 9505745  T
Q  150 tgttcttaatttgccaatcattttaccattttcattctaaactagcattctaatcttcttaaacactttgaaacacatcacttttcttggctttcaagta 249  Q
     |||||||   ||| |||||||| |||| ||||||| | |||||||| ||||| ||||||||||||    ||| || |||  |||||| ||  |||||||    
T  9505744 agttcttagcctgctaatcatttcaccactttcattttgaactagcagtctaaacttcttaaacac-accaaatacttcatctttcttagccatcaagta 9505646  T
Q  250 aattcacaactttctagtaaattcatctatgaatgacgcaaagtagttgttacctcccagtgatttgacatcaaatggtccataaacataatagtgaata 349  Q
    ||| || |||||||||||||||||||||||||||| | |||||||  | ||  |||| | |||||| || ||||| |||||| | |||| | | |||||     
T  9505645 aatccataactttctagtaaattcatctatgaatgtcacaaagtatctatttactcctactgatttcacttcaaagggtccacatacatcagaatgaatt 9505546  T
Q  350 acttcaagcttcctagtttctttaactggaattccagccttgtatgagcttcttgcttgttttctagtgcaacatttatcacatagttaactaggtagct 449  Q
    || ||||| || || ||| | || | ||| |||   || |||||||| ||||| ||||| |||| | | |||||  ||| ||||| || | |||| ||||    
T  9505545 acctcaagttttctggttgcattgaatggtattattgcattgtatgaacttctggcttgctttccaatacaacacatatgacatacttcattaggcagct 9505446  T
Q  450 tgatctgtggtaaccctttcaccattttcttctcact 486  Q
    | |||| | |||| |||| ||||||||||||||||||    
T  9505445 ttatctttcgtaaaccttgcaccattttcttctcact 9505409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 486
Target Start/End: Original strand, 16838792 - 16839227
Alignment:
Q  50 cattgtgttgtggagtgtagggagcagttacttcataatttatgccacttgataagaaaaagtccttaaactcactagatgtatactcacctcttccatt 149  Q
    |||||||||| || ||||| || ||||| ||||||| |||||||||| ||||| |  |||| || || |||||| | || ||||||||||||| |||||     
T  16838792 cattgtgttgaggtgtgtatggtgcagtgacttcatgatttatgccatttgatgaacaaaaatcattgaactcattggaagtatactcacctcctccatg 16838891  T
Q  150 tgttcttaatttgccaatcattttaccattttcattctaaactagcattctaatcttcttaaacactttgaaacacatcacttttcttggctttcaagta 249  Q
     |||||||   ||| |||||||| |||| ||| ||| | |||||||| ||||| ||||||||||||    ||| || |||  |||||| ||   |||||     
T  16838892 agttcttagcctgctaatcatttcaccactttgattttgaactagcagtctaaacttcttaaacac-accaaatacttcatctttcttagccaacaagtg 16838990  T
Q  250 aattcacaactttctagtaaattcatctatgaatgacgcaaagtagttgttacctcccagtgatttgacatcaaatggtccataaacataatagtgaata 349  Q
    ||| || |||||||||||||||||||||||||||| | |||||||  | || ||||| | |||||| || ||||| |||||  | |||| | | |||||     
T  16838991 aatccataactttctagtaaattcatctatgaatgtcacaaagtatctatttcctcctactgatttcacttcaaagggtccgcatacatcagaatgaatt 16839090  T
Q  350 acttcaagcttcctagtttctttaactggaattccagccttgtatgagcttcttgcttgttttctagtgcaacatttatcacatagttaactaggtagct 449  Q
    || ||||| || || ||| | || | ||| | |   || |||||||| |||||  |||| |||| ||| |||||  ||||||||| || | |||| ||||    
T  16839091 acctcaagttttctggttgcattgaatggtactattgcattgtatgaacttctgtcttgctttccagtacaacacatatcacatacttcattaggcagct 16839190  T
Q  450 tgatctgtggtaaccctttcaccattttcttctcact 486  Q
    | |||| |||||| ||||  |||||||||||||||||    
T  16839191 ttatctttggtaaaccttgaaccattttcttctcact 16839227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 294
Target Start/End: Original strand, 45494995 - 45495236
Alignment:
Q  52 ttgtgttgtggagtgtagggagcagttacttcataatttatgccacttgataagaaaaagtccttaaactcactagatgtatactcacctcttccatttg 151  Q
    |||||||| || ||||| || ||||| ||||||| |||||||| | ||||| || |||| || || |||||| | || ||||||||||||| |||||  |    
T  45494995 ttgtgttgaggtgtgtatggtgcagtgacttcatgatttatgctatttgatgagcaaaaatcattgaactcattggaagtatactcacctcatccatcag 45495094  T
Q  152 ttcttaatttgccaatcattttaccattttcattctaaactagcattctaatcttcttaaacactttgaaacacatcacttttcttggctttcaagtaaa 251  Q
    ||||||   ||  |||||||| |||| ||||||| | |||||| | ||||| ||||||||||||    ||| || |||  |||||| ||   |||||| |    
T  45495095 ttcttagcctgataatcatttcaccactttcattttgaactagtagtctaaacttcttaaacac-accaaatacttcatctttcttagccaacaagtaga 45495193  T
Q  252 ttcacaactttctagtaaattcatctatgaatgacgcaaagta 294  Q
    | || || ||||||||||||||||||||||||| | |||||||    
T  45495194 tccataattttctagtaaattcatctatgaatgtcacaaagta 45495236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 294
Target Start/End: Original strand, 45502737 - 45502978
Alignment:
Q  52 ttgtgttgtggagtgtagggagcagttacttcataatttatgccacttgataagaaaaagtccttaaactcactagatgtatactcacctcttccatttg 151  Q
    |||||||| || ||||| || ||||| ||||||| |||||||| | ||||| || |||| || || |||||| | || ||||||||||||| |||||  |    
T  45502737 ttgtgttgaggtgtgtatggtgcagtgacttcatgatttatgctatttgatgagcaaaaatcattgaactcattggaagtatactcacctcatccatcag 45502836  T
Q  152 ttcttaatttgccaatcattttaccattttcattctaaactagcattctaatcttcttaaacactttgaaacacatcacttttcttggctttcaagtaaa 251  Q
    ||||||   ||  |||||||| |||| ||||||| | |||||| | ||||| ||||||||||||    ||| || |||  |||||| ||   |||||| |    
T  45502837 ttcttagcctgataatcatttcaccactttcattttgaactagtagtctaaacttcttaaacac-accaaatacttcatctttcttagccaacaagtaga 45502935  T
Q  252 ttcacaactttctagtaaattcatctatgaatgacgcaaagta 294  Q
    | || || ||||||||||||||||||||||||| | |||||||    
T  45502936 tccataattttctagtaaattcatctatgaatgtcacaaagta 45502978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 368418 - 368583
Alignment:
Q  50 cattgtgttgtggagtgtagggagcagttacttcataatttatgccacttgataagaaaaagtccttaaactcactagatgtatactcacctcttccatt 149  Q
    |||||||||| ||  |||| || | ||| ||||||| |||||||||| ||||| || |||| || || |||||| | || ||||||||||| | |||||     
T  368418 cattgtgttgaggtatgtatggtgtagtgacttcatgatttatgccatttgattagcaaaaatcattgaactcattggaagtatactcaccccctccatc 368517  T
Q  150 tgttcttaatttgccaatcattttaccattttcattctaaactagcattctaatcttcttaaacac 215  Q
     |||||||   ||| |||||||| |||| ||||||| | |||||||| ||||| ||||||||||||    
T  368518 agttcttagcctgctaatcatttcaccactttcattttgaactagcaatctaaacttcttaaacac 368583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 368621 - 368695
Alignment:
Q  257 aactttctagtaaattcatctatgaatgacgcaaagtagttgttacctcccagtgatttgacatcaaatggtcca 331  Q
    |||||||||||||||||||||||||||| | |||||||  | || ||||| | |||||| || ||||| ||||||    
T  368621 aactttctagtaaattcatctatgaatgtcacaaagtatctatttcctcctactgatttcacttcaaagggtcca 368695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 486
Target Start/End: Original strand, 368771 - 368831
Alignment:
Q  426 tatcacatagttaactaggtagcttgatctgtggtaaccctttcaccattttcttctcact 486  Q
    ||||||||| || | |||| ||||| |||| |||||| |||| ||||||||||||||||||    
T  368771 tatcacatacttcattaggcagctttatctttggtaaaccttgcaccattttcttctcact 368831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 30738255 - 30738199
Alignment:
Q  220 aaacacatcacttttcttggctttcaagtaaattcacaactttctagtaaattcatc 276  Q
    ||||| |||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  30738255 aaacaaatcacttttcttggctatcaagtaaatccacaattttctagtaaattcatc 30738199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 487
Target Start/End: Complemental strand, 30738093 - 30737995
Alignment:
Q  389 ttgtatgagcttcttgcttgttttctagtgcaacatttatcacatagttaactaggtagcttgatctgtggtaaccctttcaccattttcttctcactc 487  Q
    |||| ||| ||||||||||||| |  |||||||||  ||| ||||| || ||||||| | ||||||| |||||| ||| ||||||  ||||||||||||    
T  30738093 ttgtgtgaacttcttgcttgttatacagtgcaacacatatgacatacttgactaggttgattgatctatggtaatcctctcaccaccttcttctcactc 30737995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 50 - 277
Target Start/End: Complemental strand, 63045 - 62819
Alignment:
Q  50 cattgtgttgtggagtgtagggagcagttacttcataatttatgccacttgataagaaaaagtccttaaactcactagatgtatactcacctcttccatt 149  Q
    |||||||||| ||  |||| || | ||||||||||| |||||||||| | ||| || ||||||| || |||||| | || ||||||||||||| |||||     
T  63045 cattgtgttgaggtatgtatggtgtagttacttcatgatttatgccattcgatgagcaaaagtcattgaactcagtggaagtatactcacctcctccatc 62946  T
Q  150 tgttcttaatttgccaatcattttaccattttcattctaaactagcattctaatcttcttaaacactttgaaacacatcacttttcttggctttcaagta 249  Q
     |||||||   | | ||||| || |||| |||| || | |||||||| ||||| ||| ||||||||    ||| || |||| | |||| ||   ||||||    
T  62945 agttcttagcctactaatcacttcaccactttcgttttgaactagcagtctaaactttttaaacac-accaaatacttcacctgtcttagccaacaagta 62847  T
Q  250 aattcacaactttctagtaaattcatct 277  Q
    ||| || |||||||||||||||||||||    
T  62846 aatccataactttctagtaaattcatct 62819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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