View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_8 (Length: 435)
Name: NF2024_low_8
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 283
Target Start/End: Complemental strand, 14338011 - 14337744
Alignment:
| Q |
16 |
gatccaacttgcagcagtgctaaaaggagacaatatcttcactagttatccaaatactatagggaaagacatgagtgttaagcaaggaaaatattacatg |
115 |
Q |
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| T |
14338011 |
gatccaacttgcagcagtgctaaaaggagacaatatcttcactagttatccaaatactatagggaaagacatgagtgttaagcaaggaaaatattacatg |
14337912 |
T |
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| Q |
116 |
gatgaagcagttaagaggttctttgaagcaggtcgttatgcaaagaaaatgggagttagtgatgaaaatatagtgaagatgaagccttctttgactacaa |
215 |
Q |
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| T |
14337911 |
gatgaagcagttaagaggttctttgaagcaggtcgttatgcaaagaaaatgggagttagtgatgaaaatatagtgaagatgaagccttctttgactacaa |
14337812 |
T |
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| Q |
216 |
gatcgtccaaatcttcaaacacaaaaccataggaccaaaataaaataaagattatgtagcaatagcat |
283 |
Q |
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| T |
14337811 |
gatcgtccaaatcttcaaacacaaaaccataggaccaaaataaaataaagattatgtagcaatagcat |
14337744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 14337680 - 14337635
Alignment:
| Q |
346 |
caatatgctttctttaaaacataatgagaacttaaatatatggttt |
391 |
Q |
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| T |
14337680 |
caatatgctttctttaaaaaataatgagaacttaaatatatggttt |
14337635 |
T |
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