View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024_low_9 (Length: 421)
Name: NF2024_low_9
Description: NF2024
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 41751865 - 41751459
Alignment:
| Q |
1 |
attgatattagaaattaacaaggtagatnnnnnnnttgcagttttcaactacaacccagggatgagcaccgttgttcaggtatacaaagatgactatgat |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41751865 |
attgatattagaaattaacaaggtagataaaaaaattgcagttttcaactacaacccagggatgagcaccgttgttcaggtatacaaagatgactatgat |
41751766 |
T |
|
| Q |
101 |
cattgcactatcaaagataccatctacacatacttcagagggaactctagtgttactttggacaagcctggggactattatttcttctgctctgttggaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41751765 |
cattgcactatcaaagataccatctacacatacttcagagggaactctagtgttactttggacaagcctggggactattatttcttctgctctgttggaa |
41751666 |
T |
|
| Q |
201 |
agcgttgtgagacaggccaaaaactttgggttaaagttcaatgatttgatcatttcatcttattaatttatctaagcttgaaccgttttcatattatttg |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41751665 |
agcgttgtgagacaggccaaaaactttgggttaaagttcaatgatttgatcatttcatcttattaatttatctaagcttgaaccgttttgatattatttg |
41751566 |
T |
|
| Q |
301 |
gcccatcaattgtatataaggtatat--tgtgcccttaaaagaaaggtacattgtgggcacacaattttccatttgtttatgtcttgtaccataagcaat |
398 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41751565 |
gcccatcaattgtatataaggtatattgtgtgcccttaaaagaaaggtacattgtgggcacacaattttccatttgtttatgtcttgtaccataagcaat |
41751466 |
T |
|
| Q |
399 |
atagttg |
405 |
Q |
| |
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||||||| |
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|
| T |
41751465 |
atagttg |
41751459 |
T |
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