View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20250_high_13 (Length: 345)
Name: NF20250_high_13
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 196 - 329
Target Start/End: Complemental strand, 35915505 - 35915372
Alignment:
| Q |
196 |
gtatttgatgtgttctattaatggagggttttatggttggtgttgtatattctaccatacgtttgtaaccgtcagcaccaaaattttaggagcaatattt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35915505 |
gtatttgatgtgttctattaatggagggttttatggttggtgttgtatattctaccatacgtttgtaaccgtcagcaccaaaattttaggagcaatattt |
35915406 |
T |
|
| Q |
296 |
agtagtgctatctatgtatgtactatgttgtgtt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35915405 |
agtagtgctatctatgtatgtactatgttgtgtt |
35915372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 35915690 - 35915557
Alignment:
| Q |
10 |
aataattatttgtatatctttaacaacagattgaaagtgttaattttaatttgatgaaaatgatgatggctgaggcggcaagcaagcgggggccgtcttg |
109 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35915690 |
aataattatt-gtatatctttaacaacagattgaaagtgttaattttaatttgatgaaaatgatgatggctgaggcagcaagcaagcgggggccgtcttg |
35915592 |
T |
|
| Q |
110 |
cgttgcctcgccgcgccgttgaagtggtggtaagt |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
35915591 |
cgttgcctcgccgcgccgttgaagtggtggtaagt |
35915557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University