View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_high_14 (Length: 329)
Name: NF20250_high_14
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 37 - 319
Target Start/End: Original strand, 3250427 - 3250709
Alignment:
| Q |
37 |
gggaaaatatttgaaattgtccccaaattaaagaacacaaaatgacatcatgttcatgttgctagctagctttcaccatttatctcaaatatttcttcag |
136 |
Q |
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| T |
3250427 |
gggaaaatatttgaaattgtccccaaattaaagaacacaaaatgacatcatgttcatgttgctagctagctttcaccatttatctcaaatatttcttcat |
3250526 |
T |
|
| Q |
137 |
caaccatcacttcaatattcttctcaaaaatcttgcacggtgctgcgaatcgagctgagaatgatcttgaaacattatcagcatcggtggaataaccatc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3250527 |
caaccatcacttcaatattcttctcaaaaatcttgcacggtgctgcgaatcgagctgagaatgatcttgaaacattatcagcatcggtggaataaccatc |
3250626 |
T |
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| Q |
237 |
atcgaaattctgtaagtaagagttaggatcatatataaacacaggtgaagatgatctaaaaattctcctctttttctctctct |
319 |
Q |
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| T |
3250627 |
atcgaaattctgtaagtaagagttaggatcatatataaacacaggtgaagatgatctaaaaattctcctctttttctctctct |
3250709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 91 - 308
Target Start/End: Original strand, 3289740 - 3289963
Alignment:
| Q |
91 |
catgttgctagctagctttcaccatttatctcaaatatttcttcagcaaccatcacttcaatattcttctcaaaaatcttgcacggtg---ctgcgaatc |
187 |
Q |
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|||||||||||||| |||||| |||||||||| | ||| |||||| || |||| |||||||||||||||| |||||||||| | |||| |||| |||| |
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| T |
3289740 |
catgttgctagctaactttcatcatttatctccactatctcttcaccatccattacttcaatattcttctgaaaaatcttggagggtgggcctgcaaatc |
3289839 |
T |
|
| Q |
188 |
gagctgagaatgatcttgaaacattatcagcatcggtggaat---aaccatcatcgaaattctgtaagtaagagttaggatcatatataaacacaggtga |
284 |
Q |
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| T |
3289840 |
gagcagagaatgaccttgaaaaattatcagggtcaatggaataacaaccatcatcaaaattttgtaagtaagagcaaggatcatatagaaacaccggcga |
3289939 |
T |
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| Q |
285 |
agatgatctaaaaattctcctctt |
308 |
Q |
| |
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|||| |||||||||||||||||| |
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| T |
3289940 |
agatcttctaaaaattctcctctt |
3289963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 99 - 308
Target Start/End: Original strand, 3271084 - 3271293
Alignment:
| Q |
99 |
tagctagctttcaccatttatctcaaatatttcttcagcaaccatcacttcaatattcttctcaaaaatcttgcacggtg---ctgcgaatcgagctgag |
195 |
Q |
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||||||||| ||| | | |||||| ||||| |||||| || |||||||||||| ||| ||||||||||||||| | |||| |||| |||||||||||| |
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| T |
3271084 |
tagctagctctcatcgtctatctctaatatatcttcatcatccatcacttcaaaatttttctcaaaaatcttggagggtggtcctgcaaatcgagctgag |
3271183 |
T |
|
| Q |
196 |
aatgatcttgaaacattatcagcatcggtggaataaccatcatcgaaattctgtaagtaagagttaggatcatatataaacacaggtgaagatgatctaa |
295 |
Q |
| |
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||||| ||||||| |||||||| || ||| |||||||||| || || ||||| |||||| | ||||||||| ||||||||||||||||||||||| |
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| T |
3271184 |
aatgaccttgaaaaattatcagggtcaatgg---aaccatcatcaaagttttgtaaataagagcaatgatcatatagaaacacaggtgaagatgatctaa |
3271280 |
T |
|
| Q |
296 |
aaattctcctctt |
308 |
Q |
| |
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|||||||| |||| |
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| T |
3271281 |
aaattctcatctt |
3271293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 115 - 308
Target Start/End: Original strand, 3256709 - 3256905
Alignment:
| Q |
115 |
tttatctcaaatatttcttcagcaaccatcacttcaatattcttctcaaaaatcttgca---cggtgctgcgaatcgagctgagaatgatcttgaaacat |
211 |
Q |
| |
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|||||||| ||||||| |||| | |||||||||||| |||||||| | |||||||| | |||||| || ||||||||||||||||| ||| ||| || |
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| T |
3256709 |
tttatctctaatatttgttcacaatccatcacttcaaaattcttcttacaaatcttggaggacggtgcagcaaatcgagctgagaatgaccttaaaaaat |
3256808 |
T |
|
| Q |
212 |
tatcagcatcggtggaataaccatcatcgaaattctgtaagtaagagttaggatcatatataaacacaggtgaagatgatctaaaaattctcctctt |
308 |
Q |
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|||||| || |||| ||||||||||| ||||| ||||||||||| |||| |||||||||||| || ||||| | |||||||| ||||||||||| |
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| T |
3256809 |
tatcagggtcaatggagtaaccatcatcaaaattttgtaagtaagaattagaatcatatataaatactggtgagggcgatctaaatattctcctctt |
3256905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 95 - 311
Target Start/End: Original strand, 3287670 - 3287898
Alignment:
| Q |
95 |
ttgctagctagctttcaccatttatctcaaatatttcttcagcaaccatcacttcaatattcttctcaaaaatcttgcacgg----tgctgcgaatcgag |
190 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||||| || |||||||||||| ||||||||||||||| ||| | || || ||| |||| || |
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| T |
3287670 |
ttgctagctagctttcgtcgtttatctctaatatttcttcatcatccatcacttcaacattcttctcaaaaatattgaagggtggatgatgcaaatcaag |
3287769 |
T |
|
| Q |
191 |
ctgagaatgatcttgaaacattatcagcatcggtggaataac-----catcatc-gaaattctgtaagtaagagt--taggatcatatataaacacaggt |
282 |
Q |
| |
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|||| ||||| |||||| |||||| | || |||||||||| ||||||| ||||| ||||||||||| | |||||||||||| ||||||| || |
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| T |
3287770 |
ctgaaaatgactttgaaaaattatccgggtcagtggaataactaccacatcatcaaaaattttgtaagtaagaatactaggatcatatagaaacacaagt |
3287869 |
T |
|
| Q |
283 |
gaagatgatctaaaaattctcctcttttt |
311 |
Q |
| |
|
|||| |||||||||||| |||||||||| |
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| T |
3287870 |
gaaggggatctaaaaattatcctcttttt |
3287898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 3284677 - 3284807
Alignment:
| Q |
175 |
ggtgctgcgaatcgagctgagaatgatcttgaaacattatcagcatcggtggaataaccatcatcgaaattctgtaagtaagagttaggatcatatataa |
274 |
Q |
| |
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|||| ||| ||||||||||| ||||| ||||||| |||||||| || || ||||||||||| || || ||||||||||| | ||||||||| || |
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| T |
3284677 |
ggtgttgcaaatcgagctgataatgaccttgaaaaattatcagggtcaatg---taaccatcatcaaagttttgtaagtaagaacaacgatcatataaaa |
3284773 |
T |
|
| Q |
275 |
acacaggtgaagatgatctaaaaattctcctctt |
308 |
Q |
| |
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| || ||||||||||||||||||||||||||||| |
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| T |
3284774 |
atacgggtgaagatgatctaaaaattctcctctt |
3284807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 237
Target Start/End: Original strand, 3275060 - 3275208
Alignment:
| Q |
92 |
atgttgctagctagctttcaccatttatctcaaatatttcttcagcaaccatcacttcaatattcttctcaaaaatcttgcacg---gtgctgcgaatcg |
188 |
Q |
| |
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||||| ||||||||| ||| | ||||||| ||||||||||| | |||||||||||| |||||||| |||||||| | | ||||||| ||||| |
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| T |
3275060 |
atgtttctagctagcactcatcgtttatctttgatatttcttcacaatccatcacttcaaaattcttcttgcaaatcttggaggatggtgctgcaaatcg |
3275159 |
T |
|
| Q |
189 |
agctgagaatgatcttgaaacattatcagcatcggtggaataaccatca |
237 |
Q |
| |
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||| || ||||| ||||||| |||||||| ||| ||||||||||||||| |
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| T |
3275160 |
agccgaaaatgaccttgaaaaattatcaggatcagtggaataaccatca |
3275208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 3279962 - 3280039
Alignment:
| Q |
231 |
accatcatcgaaattctgtaagtaagagttaggatcatatataaacacaggtgaagatgatctaaaaattctcctctt |
308 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||| |||||||| ||| || ||||||| ||| |||| ||| ||||||| |
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| T |
3279962 |
accatcatcaaaattttgtaagtaagaattagaatcatatagaaatactggtgaaggcgatttaaatattttcctctt |
3280039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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