View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_high_2 (Length: 851)
Name: NF20250_high_2
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_high_2 |
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| [»] scaffold0024 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 309 - 835
Target Start/End: Original strand, 17750630 - 17751147
Alignment:
| Q |
309 |
ttgtagttgttgatattttattctttttgtattgtagagaatcaaaattcagacgctgtcagaactgagccagacttcttcggtagtagtgatctgaata |
408 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
17750630 |
ttgtagctgttgatattttattctctttgtattgtagagaatcaaaattcaaacgctgtcagaactgagcctgacttcttcggtagtagtgaactgaata |
17750729 |
T |
|
| Q |
409 |
tgctctcttaatacaaggtaattctaaaataaaattagcttaattttcttgaatgataccattaagatttaggctcttgctagttttctaaaggatgcgc |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17750730 |
tgctctcttaatacaaggtaattctaaaataaaattagcttaattttcttgaatgataccattaagatttaggctcttgctagttttctaaaggatgcgc |
17750829 |
T |
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| Q |
509 |
acattaaaacttgaagatgctgctgttactgatgatgaaaaatggtttatttatggttagcagaaggatgagatttgatatgtacattatttcttcaagg |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
17750830 |
acattaaaacttgaagatgctgctgttactgatgatgaaaaatggtttatttatggttagcagatcgatgagatttgatatgtac---atttcttcaagg |
17750926 |
T |
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| Q |
609 |
ttagccaaagttggttagggtaatggtgtcgataatgaggaacattggtttggaaacacttaaagtgaagcgggtttagtaaggtccgacccaaattcta |
708 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
17750927 |
ttagccaaagttggttagggtaatggtgtcgacaacgaggaacattggtttggaaacacttaaagtgaagcgggtttagtaaggtccgaaccatattcta |
17751026 |
T |
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| Q |
709 |
agtgtttccaaagtaatggtgtcgacaatggctgcatcgagataggtggtagtttgtagaannnnnnnaaatggcaaaatatatcaataactaaacacca |
808 |
Q |
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| T |
17751027 |
agtgtttccaaa------gtgtcgacaatggctgcatcgagataggtggcagcttgtagaatttttttaaatggcaaaatatatcaataactaaacacca |
17751120 |
T |
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| Q |
809 |
aagagaacagatatcgaatcaataaca |
835 |
Q |
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| T |
17751121 |
aagagaacagatattgaatcaataaca |
17751147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 17738982 - 17738725
Alignment:
| Q |
1 |
ttacttacacaaaagattgcatgttgtttatattctcaaatcctcaaatgctattattactttacatcttatttatattctcaaaagattgcatttactt |
100 |
Q |
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| T |
17738982 |
ttacttacacaaaagattgcatcttgtttatattctcaaatcctcaaattctattattactttacatcttatttatattctcaaaatattgcatttactt |
17738883 |
T |
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| Q |
101 |
acacaaatcttaacattattaatttgtttaaattggttgaaatttaccaaattctaatgaaaaatgtgattgttgcatgagaactggctttttcatcatc |
200 |
Q |
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| T |
17738882 |
acacaaatcttaacattattaatttgtttaaattggttgaaatttaccaaattctaataaaaaatgtgattgttgcatgagaactggctttttaatcatc |
17738783 |
T |
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| Q |
201 |
caaactagacttgatttgtttgacaagcatatccatttaattagagaaatataagaaa |
258 |
Q |
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| T |
17738782 |
caaactagacttgatttgtttgacaagcatatgcatttaattagagaaatataagaaa |
17738725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 778 - 808
Target Start/End: Complemental strand, 17713821 - 17713791
Alignment:
| Q |
778 |
aatggcaaaatatatcaataactaaacacca |
808 |
Q |
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| T |
17713821 |
aatggcaaaatatatcaataactaaacacca |
17713791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 143608 - 143480
Alignment:
| Q |
47 |
aatgctattattactttacatcttatttatattctcaaaagattgcatttacttacacaaatcttaacattattaatttgtttaaattggttgaaattta |
146 |
Q |
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| T |
143608 |
aatgctattattattttaaatcttatagatattctcaaaagattccatttacttactcaaatcttataattattaatttgttta----------aattta |
143519 |
T |
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| Q |
147 |
ccaaattctaatgaaaaatgtgattgttgcatgagaact |
185 |
Q |
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| T |
143518 |
ccaatttctaatgaaaaatgtgattattgcatgagaact |
143480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 443 - 504
Target Start/End: Complemental strand, 139898 - 139837
Alignment:
| Q |
443 |
ttagcttaattttcttgaatgataccattaagatttaggctcttgctagttttctaaaggat |
504 |
Q |
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| T |
139898 |
ttagcttaattttcttgaatgatactattaagatttgagctcttgctagttttctaaaggat |
139837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 499
Target Start/End: Complemental strand, 128914 - 128857
Alignment:
| Q |
441 |
aattagcttaattttcttgaatgataccattaagatttaggctcttgctagttttctaa |
499 |
Q |
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| T |
128914 |
aattagtttaatttt-ttgaataataccattaagattttgtctcttgctagttttctaa |
128857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 6912060 - 6911978
Alignment:
| Q |
403 |
tgaatatgctctcttaatacaaggtaattctaaaataaaattagcttaattttcttgaatgataccattaagatttaggctct |
485 |
Q |
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|||||||||| |||| ||||||||||||||| || || ||||||||| || ||||||||||| || ||||||||||||| |
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| T |
6912060 |
tgaatatgctttcttgttacaaggtaattctagaaacaatttagcttaacttctgtgaatgatacctttgagatttaggctct |
6911978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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