View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20250_high_28 (Length: 246)

Name: NF20250_high_28
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20250_high_28
NF20250_high_28
[»] chr5 (2 HSPs)
chr5 (1-204)||(41646430-41646633)
chr5 (1-101)||(41653632-41653729)
[»] chr2 (1 HSPs)
chr2 (13-78)||(2432459-2432524)
[»] chr8 (1 HSPs)
chr8 (1-78)||(5022951-5023028)
[»] chr6 (1 HSPs)
chr6 (30-78)||(12438962-12439010)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 41646430 - 41646633
Alignment:
Q  1 atctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggttannnnnnnataatgatatttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  41646430 atctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggttatttttttataatgatatttttt 41646529  T
Q  101 gagtaacaaataatgctactttgttcgtctcaaagtggatgcctttataagattaataatgctcacatcttataaaaatgattagtcatacaacttttca 200  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41646530 gagtaacaaataatgctactttgttcgtctcatagtgcatgcctttataagattaataatgctcgcatcttataaaaatgattagtcatacaacttttca 41646629  T
Q  201 atgg 204  Q
    ||||    
T  41646630 atgg 41646633  T

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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41653632 - 41653729
Alignment:
Q  1 atctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggttannnnnnnataatgatatttttt 100  Q
    |||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  41653632 atctcaaacatgatg---cttctaatcctgatggatttcatttgacaatcaacaacattaaagccgttattcaggttatttttttataatgatatttttt 41653728  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 2432459 - 2432524
Alignment:
Q  13 atggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggtta 78  Q
    |||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2432459 atggctcttccaaccctgatggatttcatttgacaatcaacaacattaaagctgttattcaggtta 2432524  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5023028 - 5022951
Alignment:
Q  1 atctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggtta 78  Q
    |||||||| | ||||||||| |||| |||  |||||||||||||||||||||||| ||||||||| |||| |||||||    
T  5023028 atctcaaagacgatggctctcctaacccgattggatttcatttgacaatcaacaatattaaagccattatccaggtta 5022951  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 12439010 - 12438962
Alignment:
Q  30 gatggatttcatttgacaatcaacaacattaaagccgttattcaggtta 78  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  12439010 gatggatttcatttgacaaccaacaacattaaagctgttattcaggtta 12438962  T

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