View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_high_30 (Length: 242)
Name: NF20250_high_30
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_high_30 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 15317602 - 15317378
Alignment:
| Q |
18 |
cattttgtaccaaacttcgatctcagtcagtttctaagaagtcattcattggttcatcacgttttcacgttttcaatatcttaccttgccaatataagaa |
117 |
Q |
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| T |
15317602 |
cattttgtaccaaacttcgatctcagtcagtttctaagaagtcattcattggttgatcacgttttcacgttttcaatatcttaccttgccaatataagaa |
15317503 |
T |
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| Q |
118 |
actctctttgttattgctgttattcttttaactttggataggtgaattttccagtaaacttcataatgaaaaactttgaagtaaaatttcacatatatat |
217 |
Q |
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| T |
15317502 |
actctctttgttattgctgttattcttttaactttggataggtgaattttccagtaaacttcataatgaaaaactttgaagtaaaatttcacatatatat |
15317403 |
T |
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| Q |
218 |
ttatcacattgtgcatttggttgtt |
242 |
Q |
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| T |
15317402 |
ttatcacattgtgcatttggttgtt |
15317378 |
T |
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