View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_high_33 (Length: 231)
Name: NF20250_high_33
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 211
Target Start/End: Original strand, 6130266 - 6130450
Alignment:
| Q |
27 |
gggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgagtttgaata |
126 |
Q |
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| T |
6130266 |
gggcctaattcagctgcgaggtgtagtaagttatttccaaatatgtctacggacgttttaagccctttttggccatctatctcatatatgagtttgaaca |
6130365 |
T |
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| Q |
127 |
ctctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatttgcttc |
211 |
Q |
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| T |
6130366 |
ctttgtcttgacgatttaaaattgcatgtgcaaatatacctcttttgtttttgtccattgcccataaaaggtcaggatttgcttc |
6130450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 6105563 - 6105376
Alignment:
| Q |
24 |
gaagggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgagtttga |
123 |
Q |
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| T |
6105563 |
gaagggcctaactcagctgcgaggtgtaataagttattttcaaatatgtctttggtagttttcaactctttttggccttccatctcgtatatgagtttga |
6105464 |
T |
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| Q |
124 |
atactctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatttgcttc |
211 |
Q |
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| T |
6105463 |
acactttgtcttgacgatttaaaattgcatgtgcaaatatacctcttttgtatttgtccatggcccataaaaggtcaggatttgcttc |
6105376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 6860707 - 6860899
Alignment:
| Q |
19 |
aagaagaagggcctaattcagctgcgaggtgtagtaaattatttccaaatatgtctacggacgttttaaaccctttttggccttctatttcagatatgag |
118 |
Q |
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| T |
6860707 |
aagaggaagggcctaattcagctgcaaggtggagtaagttgtttccaaatatgtctatggatgttttcaacccttcatggccttcaatcttatatacgag |
6860806 |
T |
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| Q |
119 |
tttgaatactctgtcttgacgattcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatttgcttc |
211 |
Q |
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| T |
6860807 |
tctgaagacactggctttacgatttaaaattgcatgtgcaaatatacctcttttgtttttgtccatagcatataaaaggtcaggatttgcttc |
6860899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 11791830 - 11791891
Alignment:
| Q |
141 |
ttcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcagg |
202 |
Q |
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| T |
11791830 |
ttcaaaattgcatgtgaaaatatgcctcttttatttttatcaatagcccataagaggtcagg |
11791891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 11836078 - 11836139
Alignment:
| Q |
141 |
ttcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcagg |
202 |
Q |
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| T |
11836078 |
ttcaaaattgcatgtgaaaatatgcctcttttatttttatcaatagaccataagaggtcagg |
11836139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 11883743 - 11883807
Alignment:
| Q |
141 |
ttcaaaattgcatgtgcaaatatacctcttttgtttttgtccataacccataaaaggtcaggatt |
205 |
Q |
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| T |
11883743 |
ttcaaaattgcatgtgaaaatacgcctcttttatttttatcaatggcccataagaggtcaggatt |
11883807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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