View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_high_37 (Length: 201)
Name: NF20250_high_37
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_high_37 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2432265 - 2432069
Alignment:
| Q |
1 |
ctttatagttgccttgatgaacttggtataggcttcttgctccttgcatttatcaccaaaagttgccctataaatgatgttatatatattgcgtagataa |
100 |
Q |
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| T |
2432265 |
ctttatagtttccttgatgaacttggtatatgcttcttgctccttgcatttatcaccaaaagttgccctagaaatgatgttatat----tgcatagataa |
2432170 |
T |
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| Q |
101 |
aatttcatgagtgaggttgataatagttccagtgtttatagaaatacatcttgttaaatttaacacctcttcctctctaattgattggaatgatctcaca |
200 |
Q |
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| T |
2432169 |
aatttcatgagtgaggttgataatagttccagtgtttatagaaatacatcttgttaaatttaacacctcttcctctctaattgattggaatgatctcaca |
2432070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 2e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 41623592 - 41623750
Alignment:
| Q |
32 |
gcttcttgctccttgcatttatcaccaaaagttgccctataaatgatgttatatatattgcgtagataaaatttcatgagtgaggttgataatagttcca |
131 |
Q |
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| T |
41623592 |
gcttcttgatcattgcatttatcaccaaaagttgcccttgaaatgatgttatatgt----catagatgatatttcatctgtaaggttgatagtagatcca |
41623687 |
T |
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| Q |
132 |
gtgtttatagaaatacatcttgttaaatttaacacctcttcctctctaattgattggaatgat |
194 |
Q |
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| T |
41623688 |
gtgtttatagaaatatatctaattaattttgacaactcttcctctcgaattgattggaatgat |
41623750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 95 - 201
Target Start/End: Complemental strand, 41653357 - 41653251
Alignment:
| Q |
95 |
agataaaatttcatgagtgaggttgataatagttccagtgtttatagaaatacatcttgttaaatttaacacctcttcctctctaattgattggaatgat |
194 |
Q |
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| T |
41653357 |
agataaaatttcatctgtaaggttgatggtagatccagtgttaatagaaatatatctaattaatttcgacacctcttcctctcgaattgattggtatgat |
41653258 |
T |
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| Q |
195 |
ctcacac |
201 |
Q |
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||||||| |
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| T |
41653257 |
ctcacac |
41653251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 41463715 - 41463653
Alignment:
| Q |
139 |
tagaaatacatcttgttaaatttaacacctcttcctctctaattgattggaatgatctcacac |
201 |
Q |
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| T |
41463715 |
tagaaatacattttattaaatttgatacctcttcttctctaattgattggaatgatctcacac |
41463653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 41646219 - 41646049
Alignment:
| Q |
27 |
tataggcttcttgctccttgcatttatcaccaaaagttgccctataaatgatgttatatatattgcgtagataaaatttcatgagtgaggttgataatag |
126 |
Q |
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| T |
41646219 |
tatatgcttctttgtccttacaattatcaccaaaagatgcccttgaagcgatgttatatgt----catagctaaaatttcatctgtgaagttgattgtag |
41646124 |
T |
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| Q |
127 |
ttccagtgtttatagaaatacatcttgttaaatttaacacctcttcctctctaattgattggaatgatctcacac |
201 |
Q |
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| T |
41646123 |
accccttgtttatagaaagatatctaattaattttgatacctcttcctctcgaattgattggaatgatctcacac |
41646049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 12439227 - 12439417
Alignment:
| Q |
7 |
agttgccttgatgaacttggtataggcttcttgctccttgcatttatcaccaaaagttgccctataaatgatgttatatatattgcgtagataaaatttc |
106 |
Q |
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|||| |||||||||| ||||| | ||||||||||||||||||||||||||||||| ||| || |||| ||||||||| | |||||||||||| |
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| T |
12439227 |
agtttccttgatgaatgtggtaaatgcttcttgctccttgcatttatcaccaaaagctgctcttgaaataatgttatatga----caaagataaaatttc |
12439322 |
T |
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| Q |
107 |
atgagtgaggttgataatagttccagtgtttatagaaatacatcttgttaaatttaacacctcttcctctctaattgattggaatgatctcacac |
201 |
Q |
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| T |
12439323 |
atgactgaggttgattttagatccagtgtttgaagaaatatttttaataaaatttgacacctcttccttcctaattgattggaatgatctcacac |
12439417 |
T |
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