View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20250_high_8 (Length: 466)
Name: NF20250_high_8
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_high_8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 9 - 448
Target Start/End: Original strand, 41646012 - 41646451
Alignment:
| Q |
9 |
cgaagaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttcta |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41646012 |
cgaaaaatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttcta |
41646111 |
T |
|
| Q |
109 |
taaacaaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaaga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41646112 |
taaacaaggggtctacaatcaacttcacagatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaaga |
41646211 |
T |
|
| Q |
209 |
agcatatatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactgga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41646212 |
agcatatatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactgga |
41646311 |
T |
|
| Q |
309 |
atgatgcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41646312 |
atgatgcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtc |
41646411 |
T |
|
| Q |
409 |
ttttgtcctatcttttgagtctcaatgatcatggctcttc |
448 |
Q |
| |
|
|||||||||||||||||| |||||| || |||||||||| |
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|
| T |
41646412 |
ttttgtcctatcttttgaatctcaaacatgatggctcttc |
41646451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 41653219 - 41653638
Alignment:
| Q |
14 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||||||| ||| |
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|
| T |
41653219 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcataccaatcaattcgagaggaagaggtgtcgaaattaattagatatatttctattaac |
41653318 |
T |
|
| Q |
114 |
aaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcat |
213 |
Q |
| |
|
| || ||||| |||||| | || |||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41653319 |
actggatctaccatcaaccttacagatgaaattttatctttgacatatagcatcacttcaagggcatcttttggtgataattgtaaggacaatgaagcat |
41653418 |
T |
|
| Q |
214 |
atatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactggaatgat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||| | |
|
|
| T |
41653419 |
atatcttgttcatgaaggaatctatgtctgtggctgagagtttcagtattcataatttgtttccctcccagcattggctacatgtgattagtggaatggt |
41653518 |
T |
|
| Q |
314 |
gcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtcttttg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41653519 |
gcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtcttttg |
41653618 |
T |
|
| Q |
414 |
tcctatcttttgagtctcaa |
433 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
41653619 |
tcctatcttttgaatctcaa |
41653638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 41623789 - 41623430
Alignment:
| Q |
14 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaac |
113 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| |
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|
| T |
41623789 |
aatatgcacattggagttgttgagtgctaaacgtgcgaaatcattccaatcaattcgagaggaagagttgtcaaaattaattagatatatttctataaac |
41623690 |
T |
|
| Q |
114 |
aaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcat |
213 |
Q |
| |
|
| || ||||| |||||| | || |||||||| | | ||||||||||||||||| |||||||||| ||||||||||||| || || || ||||||||| |
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|
| T |
41623689 |
actggatctactatcaaccttacagatgaaatatcatctatgacatataacatcatttcaagggcaacttttggtgataaatgcaatgatcaagaagcat |
41623590 |
T |
|
| Q |
214 |
atatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactggaatgat |
313 |
Q |
| |
|
|||||||||||| ||||||| || ||||| ||||||| ||| || | ||||||||| || || || ||||||||||||||||||| ||||||| | |
|
|
| T |
41623589 |
ttatcttgttcatcaaggaatgtacaagggtggttgagagtgtcaatatccctaatttgtttccctctcaacattggctacatgtgattagtggaatggt |
41623490 |
T |
|
| Q |
314 |
gcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaa |
373 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||| ||||| | || ||||||||||| |
|
|
| T |
41623489 |
acataaattgaagacaatgcatagaagtggtgatatggttcttgagaagatcatcaacaa |
41623430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 41463649 - 41463701
Alignment:
| Q |
42 |
aaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaat |
94 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||| ||||| |
|
|
| T |
41463649 |
aaacgtgtgagatcattccaatcaattagagaagaagaggtatcaaatttaat |
41463701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 449
Target Start/End: Original strand, 2432037 - 2432469
Alignment:
| Q |
14 |
aatatgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaac |
113 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | ||| |||| |||| | ||||||||||| |
|
|
| T |
2432037 |
aatatgcacattagaactgttgagtgctaaacgtgtgagatcattccaatcaattagagaggaagaggtgttaaatttaacaagatgtatttctataaac |
2432136 |
T |
|
| Q |
114 |
aaggggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcat |
213 |
Q |
| |
|
| || ||| |||||| |||| ||||||||||| ||||| |||||||||| ||| |||||| ||||||||||||| || ||||| ||||||||| |
|
|
| T |
2432137 |
actggaactattatcaacctcactcatgaaattttatctatgcaatataacatcatttctagggcaacttttggtgataaatgcaaggagcaagaagcat |
2432236 |
T |
|
| Q |
214 |
atatcttgttcatgaaggaatctatgtcggtggctgagagtttcaccattcataatttgttcccatcccagcattggctacatgtgattactggaatgat |
313 |
Q |
| |
|
||| | |||||| |||||| |||| | |||| |||||||||| | ||||||||| || ||||| |||||| |||||||||||| ||||||| | |
|
|
| T |
2432237 |
ataccaagttcatcaaggaaactataaagttggcagagagtttcagtgtcactaatttgtttccctcccaacattggttacatgtgattagtggaatggt |
2432336 |
T |
|
| Q |
314 |
gcataaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtcttttg |
413 |
Q |
| |
|
||||||||||| | | || | | |||||||||| ||||| |||||||||||||| | |||| | || |||||| || |||||||||||||||| |
|
|
| T |
2432337 |
ttgtaaattgaagaaaattcacaagactggtgatatgattcttgaaaatatcatcaacga-aaag--aaaacaaagactgatggagatggaagtcttttg |
2432433 |
T |
|
| Q |
414 |
tcctatcttttgagtctcaatgatcatggctcttcc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
2432434 |
tcctatcttttgagtctcaatgatcatggctcttcc |
2432469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 12439445 - 12439032
Alignment:
| Q |
18 |
tgcacattggagctgttgagtgttaaacgtgtgagatcattccaatcaattcgagaggaagaggtatcaaaattaattagatatctttctataaacaagg |
117 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||| | |||||||||| ||||| || |||| | || ||||| ||||| | |
|
|
| T |
12439445 |
tgcacattggagctgttgagtacgaaccgtgtgagatcattccaatcaattaggaaggaagaggtgtcaaattttattaaaaatatttcttcaaacactg |
12439346 |
T |
|
| Q |
118 |
ggtctacaatcaacttcacggatgaaattttagctatgacatataacatcgcttcaagggcatcttttggtgataattgtaaggacaaagaagcatatat |
217 |
Q |
| |
|
| |||| ||||||| ||| ||||||||||| || || |||||||||| |||||| ||| ||||||||||||| || ||||| ||||||||| || |
|
|
| T |
12439345 |
gatctaaaatcaacctcagtcatgaaattttatctttgtcatataacattatttcaagagcagcttttggtgataaatgcaaggagcaagaagcatttac |
12439246 |
T |
|
| Q |
218 |
cttgttcatgaaggaatctatgtcggtggctgagagtttcaccattca-taatttgttcccatcccagcattggctacatgtgattactggaatgatgca |
316 |
Q |
| |
|
| ||||| |||||| || | ||||||||||||| | |||| |||| |||| || || ||||||||||||||||| |||| ||||||||| |
|
|
| T |
12439245 |
cacattcatcaaggaaactgcaaagatggctgagagtttta-gtttcactaatctgtttccctcacagcattggctacatgttattagtggaatgattgt |
12439147 |
T |
|
| Q |
317 |
taaattgaagagattgcatagaagtggtgatatgtttcttcaaaatatcatcaacaacaaagtaacaaaaaagacgagtgaagatggaagtcttttgtcc |
416 |
Q |
| |
|
|||||||| || | | |||| || ||| ||| | ||||| |||| || || |||||| | ||||| |||||| ||| ||||||||||||||| ||| |
|
|
| T |
12439146 |
taaattgaggaaaatccataaaactggagatgagattcttgaaaagattat---caacaatgcaacaacaaagacaggtggagatggaagtcttttatcc |
12439050 |
T |
|
| Q |
417 |
tatcttttgagtctcaat |
434 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
12439049 |
tatcttttgaatctcaat |
12439032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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