View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20250_low_1 (Length: 947)

Name: NF20250_low_1
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20250_low_1
NF20250_low_1
[»] chr4 (8 HSPs)
chr4 (419-935)||(10111424-10111937)
chr4 (19-426)||(10110991-10111399)
chr4 (787-931)||(40002117-40002261)
chr4 (787-931)||(13698386-13698530)
chr4 (787-931)||(21301908-21302052)
chr4 (787-931)||(54346251-54346395)
chr4 (787-931)||(8982360-8982504)
chr4 (793-931)||(36357195-36357333)
[»] scaffold0011 (1 HSPs)
scaffold0011 (787-934)||(4914-5061)
[»] chr5 (5 HSPs)
chr5 (787-934)||(13584789-13584936)
chr5 (787-931)||(41856467-41856612)
chr5 (787-931)||(24773432-24773576)
chr5 (787-931)||(42022860-42023005)
chr5 (787-931)||(17507950-17508093)
[»] chr8 (4 HSPs)
chr8 (787-934)||(19433322-19433469)
chr8 (787-934)||(19569472-19569619)
chr8 (787-931)||(21646157-21646301)
chr8 (787-931)||(32013574-32013718)
[»] chr6 (3 HSPs)
chr6 (787-933)||(17284919-17285064)
chr6 (787-935)||(10491015-10491163)
chr6 (787-931)||(22700321-22700465)
[»] scaffold0517 (1 HSPs)
scaffold0517 (787-931)||(1439-1583)
[»] scaffold0166 (1 HSPs)
scaffold0166 (787-931)||(15816-15960)
[»] scaffold0165 (1 HSPs)
scaffold0165 (787-931)||(14861-15005)
[»] scaffold0014 (1 HSPs)
scaffold0014 (787-931)||(29421-29565)
[»] chr7 (4 HSPs)
chr7 (787-931)||(33241051-33241195)
chr7 (787-931)||(47996848-47996992)
chr7 (787-837)||(17498785-17498835)
chr7 (787-837)||(17554379-17554429)
[»] chr3 (5 HSPs)
chr3 (787-931)||(3479022-3479166)
chr3 (787-931)||(15765094-15765238)
chr3 (787-931)||(17361953-17362097)
chr3 (787-931)||(17366595-17366739)
chr3 (787-931)||(20092725-20092869)
[»] chr2 (4 HSPs)
chr2 (787-931)||(42725523-42725667)
chr2 (787-931)||(44756675-44756819)
chr2 (790-931)||(40035834-40035975)
chr2 (854-931)||(27568706-27568786)
[»] chr1 (3 HSPs)
chr1 (787-931)||(27714319-27714463)
chr1 (787-931)||(37406491-37406635)
chr1 (787-931)||(5727993-5728137)


Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 419 - 935
Target Start/End: Original strand, 10111424 - 10111937
Alignment:
Q  419 cacagttatttctttgaaggctagcacggaatgaaatagatttcatttgtttcatgtgtgctaagctaggttaaaatgaagaatctcaagccaataattt 518  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  10111424 cacaattatttctttgaaggctagcacggaatgaaatagatttcatttgtttcatgtgtgccaagctaggttaaaatgaagaatctcaagccaatcattt 10111523  T
Q  519 gtaaaagattttgtgtttgctttgtgttgaactaataaagcatcggaatttgaggatata-tactcttggtcgttgtttatgatttggttgcaaggtatt 617  Q
    |||||| | |||||||||||||||| |||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10111524 gtaaaaaactttgtgtttgctttgtcttgaactaa---agcatcggaatttgaggatataatactcttggtcgttgtttatgatttggttgcaaggtatt 10111620  T
Q  618 catttattgcttatcattgtgttggtaagttgaaatttcttatgtaacatttatcccttcaagtacaaacaaatatgtggtcatggtaaggattgtgagt 717  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10111621 catttattgcttatcattgtgttggcaagttgaaatttcttatgtcacatttatcccttcaagtacaaacaaatatgtggtcatggtaaggattgtgagt 10111720  T
Q  718 taattaaagacattagtaaaccttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttagttttgggtactctgtttagcacata 817  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10111721 taattaaagacagcagtaaaccttttgtaaaagatttgatttgtttgcctttgaaggagatcaatgtcatcttagtttttggtactctgtttagcacata 10111820  T
Q  818 gctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaatttggtaaaggttcgattttttctttcg 917  Q
    ||||||| ||||| ||||||  ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||     
T  10111821 gctaacagtcaatgaaattt-tccccaccaatgaggcgctgcatcagaattaagcatgatagcaactactaatttgataaaggtttgattttttctttcc 10111919  T
Q  918 gctttaccgttcatctca 935  Q
    ||||||||||||||||||    
T  10111920 gctttaccgttcatctca 10111937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-167
Query Start/End: Original strand, 19 - 426
Target Start/End: Original strand, 10110991 - 10111399
Alignment:
Q  19 ggttttccttctagtatccgccgtacaattttctagcacggcgttccggcaaactaccatggtttccggcagggtttcacccatgacatcgatgatggga 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  10110991 ggttttccttctagtatccgccgtacaattttccagcacggcgttccggcaaactaccgtggtttccggcagggtttcacccatgacatcaatgatggga 10111090  T
Q  119 aggcctgatcgctaggttgaaaggttataaattgttatggnnnnnnnnnnnnnnnnnnnnnncaataaaaaatgcacaattactttgtcaatttt-gtat 217  Q
    ||||||||||||||||||||||||||||||||||||||||                      ||||||||||| ||||||||||||||||||||| ||||    
T  10111091 aggcctgatcgctaggttgaaaggttataaattgttatggtttttttacactttttgtttttcaataaaaaattcacaattactttgtcaatttttgtat 10111190  T
Q  218 cggcaagaattttgattgaggattatattccatttaatttagtttcttcattgttgttttgattaattaatctatggtgtgttgtatggtgtaatgctac 317  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10111191 cgacaagaattttgattgaggattatattccatttaatttagtttcttcattgttgttttgattaattaatctatggtgtattgtatggtgtaatgctac 10111290  T
Q  318 ctattattacctagtttatgtttatggaatttacttgcaattatatatttttcataggtatgtctctattgttcaaatttttgttgttctattgatcaac 417  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  10111291 ctattattacctagtttatgtttatgtaatttacttgcaattatatatttttcatatatatgtctctattgttcaaatttttgttgttctattgatcaac 10111390  T
Q  418 acacagtta 426  Q
    |||||||||    
T  10111391 acacagtta 10111399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 40002117 - 40002261
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  40002117 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 40002216  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||||    
T  40002217 taattcggtaaaggttctattttttctttccgctttaccgttcat 40002261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 13698386 - 13698530
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  13698386 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 13698485  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  13698486 taattcggtaaacgttctattttttctttccgctttaccgttcat 13698530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 21302052 - 21301908
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  21302052 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 21301953  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  21301952 taattcggtaaacgttctattttttctttccgctttaccgttcat 21301908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 54346251 - 54346395
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  54346251 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 54346350  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  54346351 taattcggtaaacgttctattttttctttccgctttaccgttcat 54346395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 8982504 - 8982360
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||| ||||||||||||||  | |||||||||||  | ||||||||    
T  8982504 tctttgttttgggtactctgtttagaacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgcttcggaattaagcattgttgcaactac 8982405  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  8982404 taattcggtaaacgttctattttttctttccgctttaccgttcat 8982360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 793 - 931
Target Start/End: Original strand, 36357195 - 36357333
Alignment:
Q  793 ttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaattt 892  Q
    ||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| |  |||||||||||  | |||||||||||||     
T  36357195 ttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctctggaattaagcattgttgcaactactaattc 36357294  T
Q  893 ggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    |||||| |||| |||||||||||| ||||||||||||||    
T  36357295 ggtaaacgttctattttttctttccgctttaccgttcat 36357333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 120; Significance: 7e-61; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 787 - 934
Target Start/End: Original strand, 4914 - 5061
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  4914 tcttagtcttgggtactccgtttagcacatagctaacagtcaataaaatttccccccacaaatgaggcgctgcaccagaattaagcatgatagcaactac 5013  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 934  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  5014 taattcggtaaaggttcgattttttctttccgctttaccgttcatctc 5061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 7e-61; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 787 - 934
Target Start/End: Complemental strand, 13584936 - 13584789
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13584936 tcttcgttttgggtactctgtttagcacatagctaacagtcaataaaatttccccccaccaatgaggcgctgcaccagaattaagcatgatagcaactac 13584837  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 934  Q
    || || ||||||||||||||| |||||||| |||||||||||||||||    
T  13584836 tagttcggtaaaggttcgattctttctttccgctttaccgttcatctc 13584789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 41856467 - 41856612
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||  | ||||||||    
T  41856467 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccagaattaagcattgttgcaactac 41856566  T
Q  887 taatttggtaaaggttcga-ttttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| | ||||||||||| ||||||||||||||    
T  41856567 taattcggtaaacgttctatttttttctttccgctttaccgttcat 41856612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 24773576 - 24773432
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  24773576 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 24773477  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||  ||||||||||||||    
T  24773476 taattcggtaaacgttctattttttcttttcgctttaccgttcat 24773432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 42022860 - 42023005
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||| ||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  42022860 tctttgttttgggtactgtgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 42022959  T
Q  887 taatttggtaaaggttcga-ttttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| | ||||||||||| ||||||||||||||    
T  42022960 taattcggtaaacgttctatttttttctttccgctttaccgttcat 42023005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 17507950 - 17508093
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||  ||||||||||  | ||||||||    
T  17507950 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccgaaattaagcattgttgcaactac 17508049  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||| | |||||| |||| | |||||||||| ||||||||||||||    
T  17508050 taactcggtaaacgttcta-tttttctttccgctttaccgttcat 17508093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 4e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 787 - 934
Target Start/End: Original strand, 19433322 - 19433469
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||    
T  19433322 tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgaggcgttgcaccagaattaagcattatagcaactac 19433421  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 934  Q
    ||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  19433422 taattcggtaaaagttcgattctttctttccgctttaccgttcatctc 19433469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 787 - 934
Target Start/End: Original strand, 19569472 - 19569619
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||| |||||||||||    
T  19569472 tcttagttttgggtactctgtttagcacatagctaacagtcaataaaattttcccccaccaatgaggcgttgcaccagaattaagcattatagcaactac 19569571  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcatctc 934  Q
    ||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  19569572 taattcggtaaaagttcgattctttctttccgctttaccgttcatctc 19569619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 21646301 - 21646157
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  21646301 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 21646202  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  21646201 taattcggtaaacgttctattttttctttccgctttaccgttcat 21646157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 32013574 - 32013718
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||| ||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  32013574 tctttgttttgggaactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 32013673  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  32013674 taattcggtaaatgttctattttttctttccgctttaccgttcat 32013718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 2e-55; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 787 - 933
Target Start/End: Complemental strand, 17285064 - 17284919
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    ||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||    
T  17285064 tcttagttttgggcagtctgtttagcacatagctaacagtcaataaaatttccccc-accaatgaggcgctgcaccagaattaagcatgatagcacctac 17284966  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcatct 933  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  17284965 taattcggtaaaggttcgattttttctttccgctttaccgttcatct 17284919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 787 - 935
Target Start/End: Original strand, 10491015 - 10491163
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||||||||||||| |||  |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  10491015 tcttagttttgggtgctccatttagcacatagctaacagtcaataaaatttccccccaccaatgaggcgctgcaccataattaagcatgatagcaactac 10491114  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcatctca 935  Q
    ||||| |||||| ||||||||||||||||  |||||| |||||||||||    
T  10491115 taattcggtaaaagttcgattttttcttttcgctttatcgttcatctca 10491163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 22700465 - 22700321
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  22700465 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 22700366  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  22700365 taattcggtaaacgttctattttttctttccgctttaccgttcat 22700321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 1439 - 1583
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  1439 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 1538  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  1539 taattcggtaaacgttctattttttctttccgctttaccgttcat 1583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 15960 - 15816
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  15960 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 15861  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  15860 taattcggtaaacgttctattttttctttccgctttaccgttcat 15816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 14861 - 15005
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  14861 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 14960  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  14961 taattcggtaaacgttctattttttctttccgctttaccgttcat 15005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 29421 - 29565
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  29421 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 29520  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  29521 taattcggtaaacgttctattttttctttccgctttaccgttcat 29565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 33241051 - 33241195
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  33241051 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 33241150  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  33241151 taattcggtaaacgttctattttttctttccgctttaccgttcat 33241195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 47996848 - 47996992
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  47996848 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 47996947  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  47996948 taattcggtaaacgttctattttttctttccgctttaccgttcat 47996992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 787 - 837
Target Start/End: Original strand, 17498785 - 17498835
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaattt 837  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||||||    
T  17498785 tctttgttttaggtactctgtttagcacatagcaaacagtcaataaaattt 17498835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 787 - 837
Target Start/End: Complemental strand, 17554429 - 17554379
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaattt 837  Q
    |||| ||||| |||||||||||||||||||||| |||| ||||||||||||    
T  17554429 tctttgttttaggtactctgtttagcacatagcaaacagtcaataaaattt 17554379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 2e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 3479166 - 3479022
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  3479166 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 3479067  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  3479066 taattcggtaaacgttctattttttctttccgctttaccgttcat 3479022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 15765238 - 15765094
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  15765238 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 15765139  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  15765138 taattcggtaaacgttctattttttctttccgctttaccgttcat 15765094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 17361953 - 17362097
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  17361953 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 17362052  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  17362053 taattcggtaaacgttctattttttctttccgctttaccgttcat 17362097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 17366595 - 17366739
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  17366595 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 17366694  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  17366695 taattcggtaaacgttctattttttctttccgctttaccgttcat 17366739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 20092869 - 20092725
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  20092869 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 20092770  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  20092769 taattcggtaaacgttctattttttctttccgctttaccgttcat 20092725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 2e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 42725667 - 42725523
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  42725667 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 42725568  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  42725567 taattcggtaaacgttctattttttctttccgctttaccgttcat 42725523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 44756819 - 44756675
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  44756819 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 44756720  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  44756719 taattcggtaaacgttctattttttctttccgctttaccgttcat 44756675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 790 - 931
Target Start/End: Complemental strand, 40035975 - 40035834
Alignment:
Q  790 tagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactactaa 889  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||| ||| | |||||||||| |||||   |||||||||||||| ||||||||||    
T  40035975 tagttttgggtactctgtttagcacatggaaaacaatcaataaaatttctcccgaccaatgaggcgatgcactgaaattaagcatgataacaactactaa 40035876  T
Q  890 tttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    || ||||||||||| |||||||||||| ||| |||| |||||    
T  40035875 ttcggtaaaggttctattttttctttcagctctacctttcat 40035834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 854 - 931
Target Start/End: Original strand, 27568706 - 27568786
Alignment:
Q  854 cgctgcaccagaattaagcatgatagcaactactaatttggtaaaggttcga---ttttttctttcggctttaccgttcat 931  Q
    ||||||| | |||||||||||||||||||||| ||||| ||||||||||  |   |||||||| || ||||||||||||||    
T  27568706 cgctgcaacggaattaagcatgatagcaactaataattcggtaaaggttatatttttttttctctccgctttaccgttcat 27568786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 27714319 - 27714463
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  27714319 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 27714418  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  27714419 taattcggtaaacgttctattttttctttccgctttaccgttcat 27714463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 787 - 931
Target Start/End: Complemental strand, 37406635 - 37406491
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||||  | |||||||||||  | ||||||||    
T  37406635 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgcttcggaattaagcattgttgcaactac 37406536  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| |||||| |||| |||||||||||| ||||||||||||||    
T  37406535 taattcggtaaacgttctattttttctttctgctttaccgttcat 37406491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 787 - 931
Target Start/End: Original strand, 5727993 - 5728137
Alignment:
Q  787 tcttagttttgggtactctgtttagcacatagctaacaatcaataaaatttccccccatcaatgaggcgctgcaccagaattaagcatgatagcaactac 886  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| || |||||||||||  | ||||||||    
T  5727993 tctttgttttgggtactctgtttagcacatagcaaacagtcaataaaatttctccccaccaatgaggcgctgctccggaattaagcattgttgcaactac 5728092  T
Q  887 taatttggtaaaggttcgattttttctttcggctttaccgttcat 931  Q
    ||||| | ||||  ||| |||||||||||| ||||||||||||||    
T  5728093 taattcgataaacattctattttttctttccgctttaccgttcat 5728137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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