View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_13 (Length: 378)
Name: NF20250_low_13
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 146 - 360
Target Start/End: Complemental strand, 51929039 - 51928825
Alignment:
| Q |
146 |
ccttttgagtcttgccatccaattgagggagttcaagctcgggtgcagtggaaggataagtgacgggaatatcgaattgaagatcaaattcatacttgag |
245 |
Q |
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| T |
51929039 |
ccttttgagtcttgccatccaattgagggagttcaagctcgggtgcagtggaaggataagtgacgggaatatcgaattgaagatcaaattcatacttgag |
51928940 |
T |
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| Q |
246 |
aagattatagacataccaacatttaccggtccaacgagtaccttcaggattagaggcagagatacgaaaccaatcgttgtcgttggatttgttcatctga |
345 |
Q |
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| T |
51928939 |
aagattatagacataccaacatttaccggtccaacgagtaccttcaggattagaggcagagatacgaaaccaatcgttgtcgttggatttgttcatctga |
51928840 |
T |
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| Q |
346 |
gtgtaagcaataaga |
360 |
Q |
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| T |
51928839 |
gtgtaagcaataaga |
51928825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 51929174 - 51929124
Alignment:
| Q |
11 |
cagagaggcttgaaatggacagtcaagcatatctttccacccctatacatc |
61 |
Q |
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| T |
51929174 |
cagagaggcttgaaatgaacagtcaagcatatctttccacccctatacatc |
51929124 |
T |
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