View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20250_low_15 (Length: 354)

Name: NF20250_low_15
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20250_low_15
NF20250_low_15
[»] chr5 (14 HSPs)
chr5 (122-343)||(18934163-18934384)
chr5 (122-343)||(4560184-4560405)
chr5 (123-307)||(18883492-18883676)
chr5 (166-340)||(239845-240019)
chr5 (166-340)||(14024994-14025168)
chr5 (166-333)||(32386547-32386714)
chr5 (162-321)||(18259029-18259188)
chr5 (129-213)||(34080736-34080820)
chr5 (167-321)||(41549940-41550094)
chr5 (142-228)||(42131416-42131502)
chr5 (246-315)||(16081680-16081749)
chr5 (130-223)||(22540328-22540421)
chr5 (147-298)||(32786038-32786189)
chr5 (225-296)||(42132750-42132821)
[»] chr1 (16 HSPs)
chr1 (122-343)||(22065069-22065290)
chr1 (227-343)||(11531450-11531566)
chr1 (167-340)||(6294076-6294249)
chr1 (124-296)||(2601294-2601466)
chr1 (162-321)||(23949848-23950007)
chr1 (244-340)||(38168212-38168308)
chr1 (162-321)||(5308792-5308951)
chr1 (130-223)||(42677309-42677402)
chr1 (156-223)||(8059849-8059916)
chr1 (130-321)||(23084800-23084991)
chr1 (166-340)||(16855004-16855178)
chr1 (170-292)||(12673188-12673310)
chr1 (130-223)||(50952555-50952648)
chr1 (162-213)||(34553870-34553921)
chr1 (166-332)||(28706051-28706216)
chr1 (167-222)||(39476120-39476175)
[»] chr2 (14 HSPs)
chr2 (122-343)||(17290139-17290360)
chr2 (149-319)||(26381158-26381328)
chr2 (166-340)||(42865976-42866150)
chr2 (162-321)||(13187038-13187196)
chr2 (167-340)||(24126289-24126462)
chr2 (282-340)||(40614923-40614981)
chr2 (162-223)||(7305068-7305129)
chr2 (162-223)||(6599069-6599130)
chr2 (168-340)||(11995607-11995779)
chr2 (167-222)||(40615032-40615087)
chr2 (162-223)||(37307282-37307343)
chr2 (130-321)||(40426057-40426248)
chr2 (158-216)||(6372683-6372741)
chr2 (246-319)||(981510-981583)
[»] chr3 (11 HSPs)
chr3 (122-343)||(46428666-46428887)
chr3 (122-343)||(54812116-54812337)
chr3 (122-343)||(42794596-42794817)
chr3 (122-343)||(43912120-43912341)
chr3 (130-223)||(27156155-27156248)
chr3 (130-223)||(54346853-54346946)
chr3 (167-323)||(25905871-25906027)
chr3 (166-222)||(37503148-37503204)
chr3 (162-332)||(43813097-43813266)
chr3 (284-321)||(44938282-44938319)
chr3 (247-315)||(46911790-46911858)
[»] chr4 (15 HSPs)
chr4 (132-343)||(4228291-4228502)
chr4 (123-343)||(47597458-47597678)
chr4 (1-120)||(3569919-3570042)
chr4 (166-340)||(1217218-1217392)
chr4 (166-340)||(28945242-28945416)
chr4 (122-340)||(43270665-43270879)
chr4 (166-340)||(44307583-44307757)
chr4 (166-340)||(1369493-1369667)
chr4 (162-221)||(34389795-34389854)
chr4 (162-221)||(36894406-36894465)
chr4 (282-340)||(36858682-36858740)
chr4 (148-216)||(11896048-11896116)
chr4 (246-319)||(15828312-15828385)
chr4 (284-321)||(24246289-24246326)
chr4 (284-340)||(861273-861329)
[»] chr7 (11 HSPs)
chr7 (122-343)||(24468610-24468831)
chr7 (122-343)||(24473558-24473779)
chr7 (167-340)||(46045967-46046140)
chr7 (166-340)||(8035770-8035944)
chr7 (166-340)||(38110548-38110722)
chr7 (130-321)||(48619052-48619243)
chr7 (166-340)||(5350053-5350225)
chr7 (166-213)||(8019742-8019789)
chr7 (282-340)||(5791334-5791392)
chr7 (247-315)||(3237829-3237897)
chr7 (247-296)||(45752642-45752691)
[»] chr8 (13 HSPs)
chr8 (122-343)||(44145814-44146035)
chr8 (122-343)||(38560486-38560707)
chr8 (166-340)||(45093500-45093674)
chr8 (159-324)||(9031483-9031648)
chr8 (166-340)||(42000334-42000508)
chr8 (166-340)||(33373257-33373431)
chr8 (166-340)||(35808261-35808435)
chr8 (156-216)||(1362962-1363022)
chr8 (170-314)||(40536263-40536407)
chr8 (130-223)||(1636116-1636209)
chr8 (130-223)||(26616714-26616807)
chr8 (162-223)||(456348-456409)
chr8 (286-319)||(20669984-20670017)
[»] chr6 (4 HSPs)
chr6 (172-343)||(1222848-1223019)
chr6 (284-321)||(20679029-20679066)
chr6 (167-269)||(6262249-6262351)
chr6 (122-154)||(1223019-1223051)
[»] scaffold0003 (1 HSPs)
scaffold0003 (130-280)||(356022-356172)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 122 - 343
Target Start/End: Original strand, 18934163 - 18934384
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934163 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 18934262  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934263 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 18934362  T
Q  322 ccggttaatttcgtagtttctt 343  Q
    ||||||||||||||||||||||    
T  18934363 ccggttaatttcgtagtttctt 18934384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 122 - 343
Target Start/End: Complemental strand, 4560405 - 4560184
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  4560405 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcattt 4560306  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  4560305 ctgtgaatcatttgaatttgattattttggagactcctcctactgagcttcgaaagctcatgtttgatgatatttctggggcttacatgcctagaaatgt 4560206  T
Q  322 ccggttaatttcgtagtttctt 343  Q
     |||||||||||||||||||||    
T  4560205 tcggttaatttcgtagtttctt 4560184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 123 - 307
Target Start/End: Original strand, 18883492 - 18883676
Alignment:
Q  123 gtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 222  Q
    |||||| |||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||     
T  18883492 gtatcaggaagctactgagaatggattgacatgtgcaaatcaaccatacttggcgcgaaggaaatagatatgccgattggcttgctaattttagcatttt 18883591  T
Q  223 tgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgc 307  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||    
T  18883592 tgtgaataatttgaatttgattattttggagactcctcctactgagcttcaaaagctcatgtttgatgatatttccagggcttgc 18883676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 340
Target Start/End: Complemental strand, 240019 - 239845
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||  || ||  | |  ||||   |||| ||||||||||||||| |    
T  240019 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcaatggattttctagattttcatattctggagactcctcctagt 239920  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  ||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||    
T  239919 gagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaacgtccgtttaatttcttagttt 239845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 14024994 - 14025168
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||   | ||  | |  ||||   |||| ||||||||||||||| |    
T  14024994 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagt 14025093  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  ||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||    
T  14025094 gagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaagaacgtccgtttaatttcttagttt 14025168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 333
Target Start/End: Original strand, 32386547 - 32386714
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||||||||| || | |||||| ||||| ||||||||||| ||||||||  || ||  | |  ||||   |||| |||||||||| |||| |    
T  32386547 ccatacttggcgtgaaggcaacataagtgctgattgacttgctaatttcagcatttcgatggattttctagattttcatattctggagactccccctagt 32386646  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttc 333  Q
    |||||||  |  ||  |||||||||||||||||||| |||| |||||||| || | ||| ||||||||    
T  32386647 gagcttcagagtcttttgtttgatgatatttccgggacttgtatgcctagaaacgcccgtttaatttc 32386714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 18259188 - 18259029
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcc 261  Q
    |||||||||| ||||| ||||||||||  ||||| |||||||| |||||||| ||||||||     ||||||| |||||  |  | |||||| |||||||    
T  18259188 tcaaccatacctggcgcgaaggaaatatgagtgctgattggctcgctaatttaagcatttcgacagatcattttaattttctagtgttggagtctcctcc 18259089  T
Q  262 tattgagcttcgaaagc-tcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |  |||| | | ||||  |||| ||||||||| | ||||||||||||||||||||||||||    
T  18259088 ttgtgaggt-caaaagaatcatttttgatgatttatccggggcttgcatgcctaggaatgt 18259029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 34080820 - 34080736
Alignment:
Q  129 agaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattt 213  Q
    ||||||||||||  |||| |||| || | ||| ||||||||||||||||||||||||| |  ||||  |||||||||||||||||    
T  34080820 agaagctgctgaagatgggttggaatgttcaactcaaccatacttggcgtgaaggaaacatgagtgttgattggcttgctaattt 34080736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 321
Target Start/End: Complemental strand, 41550094 - 41549940
Alignment:
Q  167 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattg 266  Q
    ||||||||||| ||  | |||| |||| ||||||||||||||||||| ||| || | ||| ||  || | ||||  || |||||||||| ||||||| ||    
T  41550094 catacttggcgagagagcaataaaagtaccgattggcttgctaatttcagccttaccgtggattcttgggattttgttgttttggagacccctcctagtg 41549995  T
Q  267 agcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    ||||    |  ||| | ||||||||||||| |||||||||||||||||| |||||    
T  41549994 agctaaatagtctcctctttgatgatattttcggggcttgcatgcctagaaatgt 41549940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 42131416 - 42131502
Alignment:
Q  142 aatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaa 228  Q
    |||| |||||||| |||||||||  ||| ||| | |  ||||||||||||||| |||||| |||||| |||||| ||||||||||||    
T  42131416 aatgaattggcatgtgcaaatcagtcatgcttagtggaaaggaaatagaagtgtcgattgacttgctcattttaacatttctgtgaa 42131502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 16081680 - 16081749
Alignment:
Q  246 ttttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctag 315  Q
    |||||||| ||||||||| |||||||| ||  |||||||||||||||||||| || || ||||| |||||    
T  16081680 ttttggagtctcctcctaatgagcttcaaagcctcatgtttgatgatatttctggagcgtgcatacctag 16081749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 22540328 - 22540421
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    |||||||||||  |||  |||| || | ||| ||||||||||||||||| |||||||||| ||||  ||||| || |||||||| |||||||||    
T  22540328 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtaaaggaaataggagtgttgattgactcgctaatttaagcatttct 22540421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 147 - 298
Target Start/End: Original strand, 32786038 - 32786189
Alignment:
Q  147 attggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattat 246  Q
    |||||||| |||||||||| ||||||||  |||||||||||| |||||  |||||| |||| ||  ||| ||||  |  | |||||||||| ||| || |    
T  32786038 attggcatgtgcaaatcaatcatacttgttgtgaaggaaataaaagtgttgattggtttgcaaacattaacattgttaaggatcatttgaacttgcttgt 32786137  T
Q  247 tttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttcc 298  Q
    ||| ||||||||| ||| | | |||| ||||||| | |||||  ||||||||    
T  32786138 tttagagactccttctactaaacttcaaaagctcctatttgacaatatttcc 32786189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 42132750 - 42132821
Alignment:
Q  225 tgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatattt 296  Q
    |||||||||| ||||||||| ||||| ||||||| ||||   |||||| ||||||||||| |||||| ||||    
T  42132750 tgaatcatttaaatttgattgttttgaagactccacctaccaagcttcaaaagctcatgtctgatgacattt 42132821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 122 - 343
Target Start/End: Complemental strand, 22065290 - 22065069
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22065290 cgtatcaggaggctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatat 22065191  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22065190 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 22065091  T
Q  322 ccggttaatttcgtagtttctt 343  Q
    ||||||||||||||||||||||    
T  22065090 ccggttaatttcgtagtttctt 22065069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 227 - 343
Target Start/End: Original strand, 11531450 - 11531566
Alignment:
Q  227 aatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggt 326  Q
    |||||||||||||||||||||||||||||| ||||||   |||||  ||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| |    
T  11531450 aatcatttgaatttgattattttggagacttctcctacccagctttaaaagctcatgtttgatgatattttcggagcttgcatgtctaagaatgtccgat 11531549  T
Q  327 taatttcgtagtttctt 343  Q
    |||||||||||||||||    
T  11531550 taatttcgtagtttctt 11531566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 167 - 340
Target Start/End: Original strand, 6294076 - 6294249
Alignment:
Q  167 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattg 266  Q
    ||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||   | ||  | |  ||||   |||| ||||||||||||||| ||    
T  6294076 catacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtg 6294175  T
Q  267 agcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    ||||||  |  ||  ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  6294176 agcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttt 6294249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 124 - 296
Target Start/End: Original strand, 2601294 - 2601466
Alignment:
Q  124 tatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    ||||| |||||||||||  ||| ||||| || |||||||||| ||| ||||||   ||  ||||| ||||||  ||||||||||||| | |||||||| |    
T  2601294 tatcatgaagctgctgaacatgaattgggatgtgcaaatcaatcattcttggcacaaacaaaatataagtgcttattggcttgctaactatagcattttt 2601393  T
Q  224 gtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatattt 296  Q
    ||| ||||||||||||||||| |||||| || |||| ||| |||||||| ||||||  | |||||||||||||    
T  2601394 gtggatcatttgaatttgattgttttggggaatccttctagtgagcttcaaaagcttctctttgatgatattt 2601466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 23949848 - 23950007
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcc 261  Q
    |||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    ||||||| ||||| ||| | |||||| |||||||    
T  23949848 tcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacagatcattttaattttattgtgttggagtctcctcc 23949947  T
Q  262 tattgagcttcgaaag-ctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |  ||||  || ||||  |||| ||||||||| | ||||||| ||||||||||||||||||    
T  23949948 ttgtgag-gtcaaaagaatcatttttgatgatttatccggggtttgcatgcctaggaatgt 23950007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 244 - 340
Target Start/End: Complemental strand, 38168308 - 38168212
Alignment:
Q  244 tattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||| ||||||||||||||| ||||||||  |  ||  ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  38168308 tattctggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttt 38168212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 5308792 - 5308951
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcc 261  Q
    |||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    ||||||| |||||  || | |||||| |||||||    
T  5308792 tcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacatatcattttaattttcttgtgttggagtctcctcc 5308891  T
Q  262 tattgagcttcgaaag-ctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |  ||||  || ||||  |||| ||||||||| | ||| || |||||||||||||||||||    
T  5308892 ttgtgag-gtcaaaagaatcatttttgatgatttatccaggacttgcatgcctaggaatgt 5308951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 42677309 - 42677402
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    |||||||||||  |||  |||| || | ||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  42677309 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 42677402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 8059916 - 8059849
Alignment:
Q  156 tgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    ||||| |||||||||| ||||| || |||||||||||||| ||||||||||||||||||||| |||||    
T  8059916 tgcaattcaaccatacctggcgcgagggaaatagaagtgctgattggcttgctaattttagcttttct 8059849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 321
Target Start/End: Complemental strand, 23084991 - 23084800
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaat 229  Q
    |||||||||||  |||  |||| || | ||| ||||||||| |||||||||||||||||| ||||| |||||||| |||||||| |||||||||  | ||    
T  23084991 gaagctgctgaagatgagttggaatgttcaactcaaccatatttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacgtat 23084892  T
Q  230 catttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    ||||| |||||  |  | |||||| ||||||||  |||| |   ||   |||| ||||||||| | ||||| |||||||| |||||||||||    
T  23084891 cattttaattttctagtgttggagtctcctccttgtgaggtcaaaataatcatttttgatgatttatccggagcttgcatacctaggaatgt 23084800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 16855004 - 16855178
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||  || ||  | |  ||||   |||| || ||||||| |||| |    
T  16855004 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcaatggattttctagattttcatattctgaagactccccctagt 16855103  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  |||||||| |||||| ||||||||||||| | ||||| ||||| |||||||| ||||||    
T  16855104 gagcttcagagtcttttgtttgataatattttcggggcttgcatgtcaaggaacgtccgtttaatttcttagttt 16855178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 292
Target Start/End: Complemental strand, 12673310 - 12673188
Alignment:
Q  170 acttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattgagc 269  Q
    |||||||||||||| |||| | |||| |||||||| || ||||||||| | ||| |||||  || |||| ||||  ||||||||  |||||||| |||||    
T  12673310 acttggcgtgaaggcaatatatgtgctgattggctagccaattttagcttatctttgaattcttggaatctgatagttttggagtatcctcctaatgagc 12673211  T
Q  270 ttcgaaagctcatgtttgatgat 292  Q
    ||| ||  |||||||||||||||    
T  12673210 ttcaaagcctcatgtttgatgat 12673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 50952648 - 50952555
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    |||||||||||  |||  |||| || | ||| ||||||||||||||||||||| |||||| ||||| |||||||| |||||| | |||||||||    
T  50952648 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaagaaaataggagtgctgattggctcgctaatataagcatttct 50952555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 34553921 - 34553870
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattt 213  Q
    |||||||||||||| ||||||||||||||||||| ||||| || ||||||||    
T  34553921 tcaaccatacttggtgtgaaggaaatagaagtgctgattgactcgctaattt 34553870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 332
Target Start/End: Original strand, 28706051 - 28706216
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||||||||| || | |||||   |||||||||||||||| ||||||||  || ||  |||  ||||   ||||||||||| | | |||| |    
T  28706051 ccatacttggcgtgaaggcaacaaaagtgtatattggcttgctaatttcagcatttcgatggattttttagattttcatattttggagaatacccctagt 28706150  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaattt 332  Q
     ||||||  |  ||  |||||||||||||||| ||||| |||||||||||||| ||||| |||||||    
T  28706151 aagcttcatagtcttttgtttgatgatatttc-ggggcctgcatgcctaggaacgtccgtttaattt 28706216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 39476120 - 39476175
Alignment:
Q  167 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 222  Q
    ||||||||||||||||| || | |||||| ||||| ||||||||||| ||||||||    
T  39476120 catacttggcgtgaaggcaacaaaagtgcagattgtcttgctaatttcagcatttc 39476175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 122 - 343
Target Start/End: Original strand, 17290139 - 17290360
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17290139 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatatttggcgtgaaggaaatagaagtgccgattggcttgctaattttagtattt 17290238  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17290239 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctagaaatgt 17290338  T
Q  322 ccggttaatttcgtagtttctt 343  Q
    ||||||||||||||||||||||    
T  17290339 ccggttaatttcgtagtttctt 17290360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 149 - 319
Target Start/End: Complemental strand, 26381328 - 26381158
Alignment:
Q  149 tggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattt 248  Q
    |||||| |||||||||||||||||| | |||||||||||| ||||   ||||||||||||||  | |||||| ||  | |||||||||||||| || |||    
T  26381328 tggcatgtgcaaatcaaccatacttcgtgtgaaggaaataaaagttttgattggcttgctaacatcagcattactaaggatcatttgaatttgtttgttt 26381229  T
Q  249 tggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaat 319  Q
    ||||||||||||||| ||| |||| ||||||| | ||||||||| |||| |||||||| |||| |||||||    
T  26381228 tggagactcctcctagtgaacttcaaaagctcctatttgatgatgtttcaggggcttgtatgcttaggaat 26381158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 42865976 - 42866150
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||| ||||| || | |||||| ||||||||||||||||| ||||||||   | ||  | |  ||||   |||| ||||||||||||||| |    
T  42865976 ccatacttggcgggaaggcaacaaaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagt 42866075  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  ||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||    
T  42866076 gagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaacgtccgtttaatttcttagttt 42866150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 13187038 - 13187196
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcc 261  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    ||||||| ||||| ||| | |||||| |||||||    
T  13187038 tcaatcatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttctacatatcattttaattttattgtgttggagtctcctcc 13187137  T
Q  262 tattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |  ||||  || ||   || | ||||||||| | | ||||||||||||||||||||||||    
T  13187138 ttgtgag-gtcaaagaatcctttttgatgatttattcggggcttgcatgcctaggaatgt 13187196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 340
Target Start/End: Complemental strand, 24126462 - 24126289
Alignment:
Q  167 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattg 266  Q
    ||||| ||||||||||| || | |||||| ||||| ||||||||||| ||||||||  || ||  | |  ||||   |||| |||||||||| |||| ||    
T  24126462 catacatggcgtgaaggcaacataagtgcagattgacttgctaatttcagcatttcgatggattttctagattttcatattctggagactccccctagtg 24126363  T
Q  267 agcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    ||||||  |  ||  ||||||||||||||||| |||||||||||||||||||  |||| |||||||| ||||||    
T  24126362 agcttcagagtcttttgtttgatgatatttccagggcttgcatgcctaggaacttccgtttaatttcttagttt 24126289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 40614981 - 40614923
Alignment:
Q  282 tgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  40614981 tgtttgatgatatttctggggcttgcatgcctaggaacgtccgtttaatttcttagttt 40614923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 7305129 - 7305068
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    |||||||||||||||||||||||||||| ||||| ||||||||  ||||||| |||||||||    
T  7305129 tcaaccatacttggcgtgaaggaaataggagtgctgattggctctctaatttaagcatttct 7305068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Original strand, 6599069 - 6599130
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    ||||||||| |||||||||||||||||  ||||| |||||||| |||||||| |||||||||    
T  6599069 tcaaccataattggcgtgaaggaaataagagtgctgattggctcgctaatttaagcatttct 6599130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 340
Target Start/End: Complemental strand, 11995779 - 11995607
Alignment:
Q  168 atacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattga 267  Q
    |||||||||||||||| || |||||||| ||||| ||||||||||| ||||||||  || ||  | |  ||||   |||| |||||||||| |||| |||    
T  11995779 atacttggcgtgaaggcaacagaagtgcagattgtcttgctaatttcagcatttcgatggattttctatattttcatattctggagactccccctagtga 11995680  T
Q  268 gcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    ||| |  |  ||  | ||| ||||||||||  ||||||||||| ||||||| ||||| |||||||| ||||||    
T  11995679 gctccagagtcttttttttaatgatatttcaagggcttgcatgtctaggaacgtccgtttaatttcttagttt 11995607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 40615087 - 40615032
Alignment:
Q  167 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 222  Q
    ||||||||||||||||| || |||||||| |||||| |||||||||| ||||||||    
T  40615087 catacttggcgtgaaggtaacagaagtgcagattggtttgctaatttcagcatttc 40615032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 37307343 - 37307282
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    ||||||||||||| |||||||||||||| ||||| |||||||| | ||| || |||||||||    
T  37307343 tcaaccatacttgacgtgaaggaaataggagtgctgattggctcgttaacttaagcatttct 37307282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 321
Target Start/End: Complemental strand, 40426248 - 40426057
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaat 229  Q
    |||||||||||  |||  |||| || | ||| ||| ||||| |||| ||||||||||||| ||||| ||||| || |||||||| |||||||||    ||    
T  40426248 gaagctgctgaagatgagttggaatgttcaactcacccatatttggtgtgaaggaaataggagtgctgattgactcgctaatttaagcatttctacagat 40426149  T
Q  230 catttgaatttgattattttggagactcctcctattgagcttcgaaag-ctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    ||||| |||||  || |  ||||| ||||||||  ||||  || ||||  || | ||||||||| | ||||||||||||||||||||||||||    
T  40426148 cattttaattttcttgtgctggagtctcctccttgtgag-gtcaaaagaatcttttttgatgatttatccggggcttgcatgcctaggaatgt 40426057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 6372683 - 6372741
Alignment:
Q  158 caaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttag 216  Q
    ||||||||||||||||||||||||||||| | |   || |||||||| |||||||||||    
T  6372683 caaatcaaccatacttggcgtgaaggaaacaaatcggctgattggctagctaattttag 6372741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 981510 - 981583
Alignment:
Q  246 ttttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaat 319  Q
    ||||||||  |||| ||| |||||||| |||  ||||||||||||||||||  || || |||||||||||||||    
T  981510 ttttggagtatccttctaatgagcttcaaaacttcatgtttgatgatatttatggagcgtgcatgcctaggaat 981583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 122 - 343
Target Start/End: Original strand, 46428666 - 46428887
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46428666 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcatgaaggaaatagaagtgccgattggcttgctaattttagcattt 46428765  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46428766 atgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccgaggcttgcatgcctaggaatgt 46428865  T
Q  322 ccggttaatttcgtagtttctt 343  Q
    ||| ||||||||||||||||||    
T  46428866 ccgtttaatttcgtagtttctt 46428887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 122 - 343
Target Start/End: Complemental strand, 54812337 - 54812116
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54812337 cgtatcaggaagctgctgagaatggattagcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 54812238  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54812237 ctgtgaatcatttgaatttgattatttcggagactcctcctattgagcttcgaaagctcatgtttgatgatatttcccgggcttgcatgcctaggaatgt 54812138  T
Q  322 ccggttaatttcgtagtttctt 343  Q
    ||||||||||||| ||||||||    
T  54812137 ccggttaatttcgcagtttctt 54812116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 122 - 343
Target Start/End: Original strand, 42794596 - 42794817
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |    
T  42794596 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagaatat 42794695  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42794696 atgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcacgcctaggaatgt 42794795  T
Q  322 ccggttaatttcgtagtttctt 343  Q
     |||||||||||||||||||||    
T  42794796 gcggttaatttcgtagtttctt 42794817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 122 - 343
Target Start/End: Complemental strand, 43912341 - 43912120
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| ||||||| ||| ||||||||||||  |||||||||||||||  ||||| |||| ||||| |||||   |||  ||||||||||||| |||||    
T  43912341 cgtatcaggaagctgttgaaaatggattggcaagtgcaaatcaaccatatctggcgcgaagaaaatataagtgtatattaccttgctaattttaacattt 43912242  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |||||||||||||||||||| || |||||||||||||  ||| |||||||| ||| |||| |||||||||||||||||||| ||||||||||| ||||||    
T  43912241 ctgtgaatcatttgaatttggttgttttggagactccagctactgagcttcaaaacctcacgtttgatgatatttccggggtttgcatgcctaagaatgt 43912142  T
Q  322 ccggttaatttcgtagtttctt 343  Q
    || |||||||||||||||||||    
T  43912141 ccagttaatttcgtagtttctt 43912120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 27156248 - 27156155
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    |||||||||||  |||  |||| || | ||| |||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  27156248 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttcagcatttct 27156155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 54346853 - 54346946
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    |||||||||||  |||  |||| || | ||| ||| |||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||    
T  54346853 gaagctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 54346946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 323
Target Start/End: Original strand, 25905871 - 25906027
Alignment:
Q  167 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattg 266  Q
    ||||||||| ||||||| || |||||||| ||||| ||||||||||| ||||||||  || ||  | |  ||||   |||| | |||||||| |||| ||    
T  25905871 catacttggtgtgaaggcaacagaagtgcagattgacttgctaatttcagcatttcaatggattttctagatttacatattcttgagactccccctagtg 25905970  T
Q  267 agcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtcc 323  Q
    ||||||  |  ||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  25905971 agcttcagagtcttttgtttgatgatatttccggggtttgcatgcctaggaacgtcc 25906027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 37503148 - 37503204
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 222  Q
    ||||||||| |||||||| || |||||||| ||||| ||||||||||||||||||||    
T  37503148 ccatacttgacgtgaaggcaacagaagtgcagattgacttgctaattttagcatttc 37503204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 332
Target Start/End: Original strand, 43813097 - 43813266
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcc 261  Q
    ||||||||| |||||||||||||||| | ||||| ||||| || ||||| || ||||||||| |  ||| ||| |||||| |  | ||| || |||||||    
T  43813097 tcaaccataattggcgtgaaggaaattggagtgctgattgactcgctaacttaagcatttctatagatcgttt-aatttgttgttgttgaagtctcctcc 43813195  T
Q  262 tattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaattt 332  Q
    || |||| | | | | ||||| ||||||||| | ||||  | ||| |||||||||||||| || |||||||    
T  43813196 tagtgaggtccaataactcatttttgatgatttatccgtagtttgtatgcctaggaatgttcgattaattt 43813266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Original strand, 44938282 - 44938319
Alignment:
Q  284 tttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  44938282 tttgatgatatttccgggacttgcatgtctaggaatgt 44938319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 46911790 - 46911858
Alignment:
Q  247 tttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctag 315  Q
    ||||||| ||||| ||| |||||||| ||  |||||||||||||||||||| || || ||||| |||||    
T  46911790 tttggagtctccttctaatgagcttcaaagcctcatgtttgatgatatttctggagcgtgcatacctag 46911858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 132 - 343
Target Start/End: Original strand, 4228291 - 4228502
Alignment:
Q  132 agctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatca 231  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4228291 agctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatta 4228390  T
Q  232 tttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatt 331  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  4228391 tttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaagaatatccggttaatt 4228490  T
Q  332 tcgtagtttctt 343  Q
    ||||||||||||    
T  4228491 tcgtagtttctt 4228502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 123 - 343
Target Start/End: Complemental strand, 47597678 - 47597458
Alignment:
Q  123 gtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttc 222  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  47597678 gtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcataaaggaaatagaagtgccgattggcttgctaattttagcatttt 47597579  T
Q  223 tgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| |||||||    
T  47597578 tgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctgatgtttgattatatttccgaggcttgcatgcctaagaatgtc 47597479  T
Q  323 cggttaatttcgtagtttctt 343  Q
    |||||||||||||||||||||    
T  47597478 cggttaatttcgtagtttctt 47597458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 3570042 - 3569919
Alignment:
Q  1 acaaatgcatggtgattgttaaaagaggaacttaaatggccaaa----tcacttgagtattaattttattagtattaattactttatgtcacatagtata 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3570042 acaaatgcatggtgattgttaaaagaggaacttaaatggccaaaccaatcacttgagtattaattttattagtattaattactttatgtcacatagtata 3569943  T
Q  97 gtattttttgacaagtacatagta 120  Q
    ||||||||||||||||||||||||    
T  3569942 gtattttttgacaagtacatagta 3569919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 1217218 - 1217392
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||   | ||  |||  ||||   |||| ||||||||||||||| |    
T  1217218 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttttagattttcatattctggagactcctcctagt 1217317  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  1217318 gagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttt 1217392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 340
Target Start/End: Complemental strand, 28945416 - 28945242
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||   | ||  |||  ||||   |||| | ||||||||||||| |    
T  28945416 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttttagattttcatattctagagactcctcctagt 28945317  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    ||||||| ||  ||  ||||||||||||||| |||| ||| |||||||||||| ||||| |||||||| ||||||    
T  28945316 gagcttcaaagtcttttgtttgatgatattttcgggacttacatgcctaggaacgtccgtttaatttcttagttt 28945242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 122 - 340
Target Start/End: Complemental strand, 43270879 - 43270665
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||||||||||  | | |||  ||| |||| ||||||||||||||| ||| ||||||| ||||| |||||  ||| | |||||||| |||| |||||    
T  43270879 cgtatcaagaagctattaaaaattaattagcatttgcaaatcaaccatatttgacgtgaagaaaatataagtg--gat-gacttgctaactttaacattt 43270783  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
     |||| || |||| ||||||| | |||||||||||||||||||| |||||  ||| ||||| ||| |||||||||| | ||||| ||||  ||  |||||    
T  43270782 ttgtggataattttaatttgactgttttggagactcctcctattaagctttaaaaactcattttttatgatatttctgtggcttacatgtata-aaatgt 43270684  T
Q  322 ccggttaatttcgtagttt 340  Q
    ||| || ||||||||||||    
T  43270683 ccgttttatttcgtagttt 43270665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 44307583 - 44307757
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||  || ||  | |  ||||   |||| |||||||||| |||| |    
T  44307583 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttcgatggattttctagattttcatattctggagactccccctagt 44307682  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  || |||||||||||  ||||||||||||||||||||| || || |||||||| ||||||    
T  44307683 gagcttcagagtcttttggttgatgatattatcggggcttgcatgcctaggaacgttcgtttaatttcttagttt 44307757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 1369493 - 1369667
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||   | ||  | |  ||||   |||| | ||||||||||||| |    
T  1369493 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattcttgagactcctcctagt 1369592  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  |||||||||||||||||||  |||||||||||||||| ||||  |||||||| ||||||    
T  1369593 gagcttcagagtcttttgtttgatgatatttccggaacttgcatgcctaggaacgtccatttaatttcttagttt 1369667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 34389854 - 34389795
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    |||||||||||| ||||||||||||||| ||||| |||||||| |||||||| |||||||    
T  34389854 tcaaccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaagcattt 34389795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 36894465 - 36894406
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    |||||||||||||||||||||||||||| ||||  |||||||| |||||||| |||||||    
T  36894465 tcaaccatacttggcgtgaaggaaataggagtgttgattggctcgctaatttaagcattt 36894406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 36858740 - 36858682
Alignment:
Q  282 tgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||||||||||||||| ||||||||| |||||| ||||  |||||||| ||||||    
T  36858740 tgtttgatgatatttccgggacttgcatgcgtaggaacgtccttttaatttcttagttt 36858682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 11896116 - 11896048
Alignment:
Q  148 ttggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttag 216  Q
    ||||||| | || ||||||||||| ||||||||||||||||||   || |||||||| |||||||||||    
T  11896116 ttggcatgttcatatcaaccatacatggcgtgaaggaaatagatcagcagattggctagctaattttag 11896048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 15828385 - 15828312
Alignment:
Q  246 ttttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaat 319  Q
    |||||||| ||||||||| |||||||| |  ||   |||||||||||||||| || || |||||||||||||||    
T  15828385 ttttggagtctcctcctaatgagcttcaactgccactgtttgatgatatttctggagcgtgcatgcctaggaat 15828312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 24246326 - 24246289
Alignment:
Q  284 tttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  24246326 tttgatgatattttcggggcttgcatgtctaggaatgt 24246289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 861273 - 861329
Alignment:
Q  284 tttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    ||||||||||||||||||||||||||| |||| | ||| ||| ||| ||| ||||||    
T  861273 tttgatgatatttccggggcttgcatgtctagaagtgttcggctaacttcttagttt 861329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 122 - 343
Target Start/End: Original strand, 24468610 - 24468831
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24468610 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 24468709  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |||||||||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  24468710 ctgtgaatcatttgaatttgattattttcgaaactcctcctactcagcttcgaaagctcatgtttgatgatatttccggggcttgaatgccgaggaatgt 24468809  T
Q  322 ccggttaatttcgtagtttctt 343  Q
    ||||||||||||||||||||||    
T  24468810 ccggttaatttcgtagtttctt 24468831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 122 - 343
Target Start/End: Original strand, 24473558 - 24473779
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24473558 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 24473657  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |||||||||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  24473658 ctgtgaatcatttgaatttgattattttcgaaactcctcctactcagcttcgaaagctcatgtttgatgatatttccggggcttgaatgccgaggaatgt 24473757  T
Q  322 ccggttaatttcgtagtttctt 343  Q
    ||||||||||||||||||||||    
T  24473758 ccggttaatttcgtagtttctt 24473779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 340
Target Start/End: Original strand, 46045967 - 46046140
Alignment:
Q  167 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattg 266  Q
    ||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||   | ||  | |  ||||   |||| ||||||||||||||| ||    
T  46045967 catacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagtg 46046066  T
Q  267 agcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    ||||||  |  ||  ||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||    
T  46046067 agcttcagagtcttttgtttgatgatatttccggggcttgcatgtctaggaacgtccgtttaatttcttagttt 46046140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 8035770 - 8035944
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||  || ||  | |  ||||   |||| |||||||||| |||| |    
T  8035770 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttcgatggattttctagattttcatattctggagactccccctagt 8035869  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
     ||||||  |  ||  |||||||||||||||||||||||||||||||||| || ||| | |||||||| ||||||    
T  8035870 tagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctagaaacgtcagtttaatttcttagttt 8035944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 340
Target Start/End: Complemental strand, 38110722 - 38110548
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||||   | ||  | |  ||||   |||| |||||||||| |||| |    
T  38110722 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttcgacggattttctagattttcatattctggagactccacctagt 38110623  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  |||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||    
T  38110622 gagcttcagagtcttttgtttgatgatatttctggggcttgcatgcctaggaacgtccgtttaatttcttagttt 38110548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 321
Target Start/End: Original strand, 48619052 - 48619243
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaat 229  Q
    |||||||||||  |||  |||| || | ||| |||||||||||||||||||||||||||  ||||| |||||||| |||||||| |||||||||   |||    
T  48619052 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataagagtgctgattggctcgctaatttaagcatttctacaaat 48619151  T
Q  230 catttgaatttgattattttggagactcctcctattgagcttcgaaag-ctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    ||||| |||||  |  | |||||| ||||||||  ||||  || ||||  || | ||||||||| | |||||||||||||||| |||||||||    
T  48619152 cattttaattttctagtgttggagtctcctccttctgag-atcaaaagaatcctttttgatgatttatccggggcttgcatgcttaggaatgt 48619243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 5350053 - 5350225
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||||||||| || | |||||| ||||||||||||||||| ||||||||  || ||  |||  || |   |||| | |||||||| |||| |    
T  5350053 ccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttcgatggat--tttctatattcatattctagagactccccctagt 5350150  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  ||||||||||||||||| || |||| ||||||||||| ||||| |||||| | ||||||    
T  5350151 gagcttcagagtcttttgtttgatgatatttccaggacttgtatgcctaggaacgtccgtttaattccttagttt 5350225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 8019789 - 8019742
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattt 213  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  8019789 ccatacttggcgtgaaggaaataggagtgctgattggctcgctaattt 8019742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 5791392 - 5791334
Alignment:
Q  282 tgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    ||||||||||||||| ||||||||||||| ||| ||| ||||| |||||||| ||||||    
T  5791392 tgtttgatgatattttcggggcttgcatgtctaagaacgtccgtttaatttcttagttt 5791334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 3237897 - 3237829
Alignment:
Q  247 tttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctag 315  Q
    ||||||||||||||||| |||||||||||  ||| | ||| |||||||||| |||||||| || |||||    
T  3237897 tttggagactcctcctagtgagcttcgaagactccttttttatgatatttctggggcttgtattcctag 3237829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 45752691 - 45752642
Alignment:
Q  247 tttggagactcctcctattgagcttcgaaagctcatgtttgatgatattt 296  Q
    ||||||| ||||||||| |||||||| ||  |||||||||||||||||||    
T  45752691 tttggagtctcctcctaatgagcttcaaagcctcatgtttgatgatattt 45752642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 122 - 343
Target Start/End: Original strand, 44145814 - 44146035
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  44145814 cgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcattt 44145913  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||  |||||    
T  44145914 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatggttgatgatattttcggggcttgcatgcctaaaaatgt 44146013  T
Q  322 ccggttaatttcgtagtttctt 343  Q
    ||||||||||||||| ||||||    
T  44146014 ccggttaatttcgtaatttctt 44146035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 122 - 343
Target Start/End: Complemental strand, 38560707 - 38560486
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcattt 221  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  38560707 cgtatcaagaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcacgaaggaaatagaagtgccgattggcttgctaattttagcattt 38560608  T
Q  222 ctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
     |||||||||||||||||||||| ||||| ||||| |  | | |||||||| |||||||||||||||||||||||||||| ||||||||||||  ||| |    
T  38560607 ttgtgaatcatttgaatttgattgttttgaagacttcatccactgagcttcaaaagctcatgtttgatgatatttccgggacttgcatgcctatcaatat 38560508  T
Q  322 ccggttaatttcgtagtttctt 343  Q
    ||||||||||||||||||||||    
T  38560507 ccggttaatttcgtagtttctt 38560486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 45093500 - 45093674
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||||||||| || |||||||| ||||||||||| ||||| ||||||||  || ||  | |  ||||   |||| || ||||||| |||| |    
T  45093500 ccatacttggcgtgaaggcaacagaagtgcagattggcttgcaaatttcagcatttcgatggattttctagattttcatattctgaagactccccctagt 45093599  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  45093600 gagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaacgtccgtttaatttcttagttt 45093674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 159 - 324
Target Start/End: Complemental strand, 9031648 - 9031483
Alignment:
Q  159 aaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcc 258  Q
    |||| ||||||||||  |||||||||||||||||||  ||||||||||| ||  ||||||||  |  | |||||||||||||| || ||||||||||||     
T  9031648 aaattaaccatacttaacgtgaaggaaatagaagtgttgattggcttgcaaacattagcattattaaggatcatttgaatttgctttttttggagactct 9031549  T
Q  259 tcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccg 324  Q
    ||||| |||||||| ||  ||| ||||||||||  |||  |||||||| |||| ||||||||||||    
T  9031548 tcctagtgagcttcaaagactcctgtttgatgacgtttttggggcttgtatgcttaggaatgtccg 9031483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 42000334 - 42000508
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtg-aatcatttgaatttgattattttggagactcctcctat 264  Q
    |||||||||||||||||| || | |||||| ||||||||||||||||| ||||||||  || |||   | || ||| || ||| |||||||||  ||||     
T  42000334 ccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttcgatggaatttctagattttcat-attctggagactctccctag 42000432  T
Q  265 tgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||| ||  ||  |||||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||    
T  42000433 tgagcttcaaagtcttttgtttgatgatatttccggggcttgcatgcataggaatgttcgtttaatttcttagttt 42000508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 33373257 - 33373431
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||| ||||| || | |||||| |||||| |||||||||| ||||||||   | ||  | |  ||||   |||| ||||||||||||||| |    
T  33373257 ccatacttggcgggaaggcaacaaaagtgcagattggattgctaatttcagcatttcgacggattttctagattttcatattctggagactcctcctagt 33373356  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  ||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||    
T  33373357 gagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaacgtccgtttaatttcttagttt 33373431  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 340
Target Start/End: Original strand, 35808261 - 35808435
Alignment:
Q  166 ccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctatt 265  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||  | ||||||  || ||  | |  || |   |||| |||||| ||| |||| |    
T  35808261 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaattacaacatttcgatggattctctagatcttcatattatggagaatccccctagt 35808360  T
Q  266 gagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagttt 340  Q
    |||||||  |  ||  |||||||| |||||||||||||||||||||||||||| ||||  |||||||| ||||||    
T  35808361 gagcttcagagtcttttgtttgattatatttccggggcttgcatgcctaggaacgtccttttaatttcttagttt 35808435  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 1362962 - 1363022
Alignment:
Q  156 tgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttag 216  Q
    ||||| |||||||||| ||||  || |||||||||||||| ||||||||||||||||||||    
T  1362962 tgcaattcaaccatacctggcaggagggaaatagaagtgctgattggcttgctaattttag 1363022  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 314
Target Start/End: Complemental strand, 40536407 - 40536263
Alignment:
Q  170 acttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattgagc 269  Q
    ||||||||||||||  | ||| |||| |||||||| || ||||||||| | ||| |||||  || |||| || |   ||||||| ||||||||| |||||    
T  40536407 acttggcgtgaaggcgacagatgtgctgattggctagccaattttagcttatctttgaattcttggaatctggtagctttggagtctcctcctaatgagc 40536308  T
Q  270 ttcgaaagctcatgtttgatgatatttccggggcttgcatgccta 314  Q
    ||| ||  |||||||||||||||||||  || || ||||||||||    
T  40536307 ttcaaagcctcatgtttgatgatatttttggagcgtgcatgccta 40536263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 1636116 - 1636209
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    |||||||||||  |||  |||| || | ||| ||| |||||||| ||||||||||||||| ||||| |||||||| |||||||| | |||||||    
T  1636116 gaagctgctgaagatgagttggaatgttcaactcacccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaatcatttct 1636209  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 26616807 - 26616714
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    |||||||||||  |||  |||| || | ||| |||||||||||||||||||||||||||  ||| | ||||||||  ||||||| |||||||||    
T  26616807 gaagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtactgattggctcactaatttaagcatttct 26616714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 456409 - 456348
Alignment:
Q  162 tcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 223  Q
    ||||||||||||| || ||||||||||| |||||  ||||||| |||||||| | |||||||    
T  456409 tcaaccatacttgacgcgaaggaaataggagtgctaattggctcgctaatttaaacatttct 456348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 20670017 - 20669984
Alignment:
Q  286 tgatgatatttccggggcttgcatgcctaggaat 319  Q
    |||||||||||| |||||||||||||||||||||    
T  20670017 tgatgatatttctggggcttgcatgcctaggaat 20669984  T

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Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 172 - 343
Target Start/End: Complemental strand, 1223019 - 1222848
Alignment:
Q  172 ttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattgagctt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1223019 ttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattgagctt 1222920  T
Q  272 cgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagtttctt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1222919 cgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaatgtccggttaatttcgtagtttctt 1222848  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 321
Target Start/End: Complemental strand, 20679066 - 20679029
Alignment:
Q  284 tttgatgatatttccggggcttgcatgcctaggaatgt 321  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20679066 tttgatgatatttccggggcttgcatgcctaggaatgt 20679029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 269
Target Start/End: Original strand, 6262249 - 6262351
Alignment:
Q  167 catacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatcatttgaatttgattattttggagactcctcctattg 266  Q
    |||||||| || ||||| ||||||||||| ||||| |||| |||||| ||| || |||||||| ||| ||||||  || ||||| |||  ||||||| ||    
T  6262249 catacttgacgagaaggcaatagaagtgctgattgacttgttaatttcagccttactgtgaattattggaattttgttgttttgaagaaccctcctagtg 6262348  T
Q  267 agc 269  Q
    |||    
T  6262349 agc 6262351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 1223051 - 1223019
Alignment:
Q  122 cgtatcaagaagctgctgagaatggattggcat 154  Q
    ||||||| |||||||||||||||||||||||||    
T  1223051 cgtatcaggaagctgctgagaatggattggcat 1223019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 356022 - 356172
Alignment:
Q  130 gaagctgctgagaatggattggcatatgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaat 229  Q
    |||| |||||| |||| |||  ||| ||||||||||| ||| ||| |  |||| ||||| |||||| ||||  |||||||| |||||| ||| | || ||    
T  356022 gaagttgctgaaaatgaattaacatgtgcaaatcaactatatttgacccgaagaaaatacaagtgctgattaacttgctaactttagcgtttttatggat 356121  T
Q  230 catttgaatttgattattttggagactcctcctattgagcttcgaaagctc 280  Q
    || |||||||||||| ||||||||| |||||||| ||| | || |||||||    
T  356122 caattgaatttgattgttttggagagtcctcctagtgaccatcaaaagctc 356172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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