View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_16 (Length: 352)
Name: NF20250_low_16
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 52 - 317
Target Start/End: Original strand, 29434948 - 29435213
Alignment:
| Q |
52 |
atatagcatggtgaaattcaggccaggattcattcactatgtgtttttcactcttaacgtctatggatgcctctcagtgatcgagagtatcatgatggtt |
151 |
Q |
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| T |
29434948 |
atataacatggtgaaattcaggccaggattcattcactatgtgtttttcactcttaacgtctatggatgcctctcagtgatcgagagtatcatgatggtt |
29435047 |
T |
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| Q |
152 |
gtagcttcgcttgttccaaatttccttatgggaatcgttacaggagctggaatcattgtaagaacaaatggataggaaaactctacttgaaacctaccac |
251 |
Q |
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| T |
29435048 |
gtagcttcgcttgttccaaatttccttatgggaatcgttacaggagctggaatcattgtaagaacaaatggataggaaaactctacttgaaacctaccac |
29435147 |
T |
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| Q |
252 |
atgatccacatgtgttaatttttcatatttcattggatgttcatgcagggaatcatgatgatgtcc |
317 |
Q |
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| T |
29435148 |
atgatccacacgtgttaatttttcatatttcattggttgttcatgcagggaatcatgatgatgtcc |
29435213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 52 - 314
Target Start/End: Original strand, 29468171 - 29468426
Alignment:
| Q |
52 |
atatagcatggtgaaattcaggccaggattcattcactatgtgtttttcactcttaacgtctatggatgcctctcagtgatcgagagtatcatgatggtt |
151 |
Q |
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||||| ||||||||||||||| || |||||||||||||||| |||||||||| ||||| |||| |||||| |||||||||| |||||| ||||||||||| |
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| T |
29468171 |
atataacatggtgaaattcagacccggattcattcactatgcgtttttcactattaacatctacggatgcatctcagtgattgagagtctcatgatggtt |
29468270 |
T |
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| Q |
152 |
gtagcttcgcttgttccaaatttccttatgggaatcgttacaggagctggaatcattgtaagaacaaatggataggaaaactctacttgaaacctaccac |
251 |
Q |
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| T |
29468271 |
gtagctgcacttgttccaaattttctcatgggaatcattacaggagctggaatcattgtaagaacaaatgg---cgaaaattctacttgaaacctaccac |
29468367 |
T |
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| Q |
252 |
atgatccacatgtgttaatttttcatatttcattggatgttcatgcagggaatcatgatgatg |
314 |
Q |
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| T |
29468368 |
atgatccccatgtgttaatttgtcatat---att-gttattcatgcagggaatcatgatgatg |
29468426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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