View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_17 (Length: 346)
Name: NF20250_low_17
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 37078986 - 37078657
Alignment:
| Q |
1 |
tatccatgaaacaaacgcatcctaagtgtttttctttttctcaacatgaaacagaacacaatgtgcagtgcactctctaaaccctcatcactatagctaa |
100 |
Q |
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| T |
37078986 |
tatccatgaaacaaatgcatcctaagtgtttttctttttctcaacatgaaacagaacaaaatgtgcagtgcactctctaaaccctcatcactatagctaa |
37078887 |
T |
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| Q |
101 |
aaaccttgaatatgaaatacatgaaaggtaaagttgatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaaatcatttattaacact |
200 |
Q |
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| T |
37078886 |
caaccttgaatatgaaatacatgaaaggtaaagttgatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaaatcatttattaacact |
37078787 |
T |
|
| Q |
201 |
tcctaaaatcatatttgaaggtattctgtaaagagagtggactgagcctattttcaatcaatgagaaacaaaacaaagctatgggccaataacaaagcat |
300 |
Q |
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| T |
37078786 |
tcctaaaatcatatttgaaggtattctgtaaagagagtggactgagcctattttcaatcaatgagaaacaaaacaaagctatgggccaataacaaagcat |
37078687 |
T |
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| Q |
301 |
gcaatgcaacaaaacataattggataataa |
330 |
Q |
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| T |
37078686 |
gcaatgcaacaaaacataattggataataa |
37078657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 277
Target Start/End: Complemental strand, 37064754 - 37064584
Alignment:
| Q |
112 |
atgaaatacatgaaaggtaaagttgatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaaatcatttattaacacttcctaaa---- |
207 |
Q |
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| T |
37064754 |
atgaaatacataaaaggttgggtagataattaaacgaagtattgaaaattgagttaggcaagcaccatgttaaatcatttattaaaactttatcaattcc |
37064655 |
T |
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| Q |
208 |
---atcatatttgaaggtattctgtaaagagagtggactgagcctattttcaatcaatgagaaacaaaacaaa |
277 |
Q |
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| T |
37064654 |
catttcataattgaatgtattctggaa--atggtggaatgagcctattttcaatcaatgagaaacaaaacaaa |
37064584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 196
Target Start/End: Complemental strand, 37068980 - 37068830
Alignment:
| Q |
36 |
ttttctcaacatgaaacagaacacaatgtgcagtgcactctctaaaccctcatcactatagctaaaaaccttgaatatgaaatacatgaaaggtaaagtt |
135 |
Q |
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| T |
37068980 |
ttttctcgacatgaaacagtaaacaatgtgca-------ctctaaatcctcatcactatagctaacaacct--caaatgaaatacatgaaagttcgggtt |
37068890 |
T |
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| Q |
136 |
gatcaataaaccaagtattgaatattgtgtttggcaagcaccatgttaaatcatttattaa |
196 |
Q |
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| T |
37068889 |
gatcattgaattaagtattgaatattttgttt-gtaggtaccatgttcaatcatttattaa |
37068830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 37064543 - 37064508
Alignment:
| Q |
280 |
tatgggccaataacaaagcatgcaatgcaacaaaac |
315 |
Q |
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| T |
37064543 |
tatgggccaataacaaagcatgcagtgcaacaaaac |
37064508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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