View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_20 (Length: 320)
Name: NF20250_low_20
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 13888414 - 13888108
Alignment:
| Q |
1 |
aggttattgtgatggtgtaaagagtgttgtcaatggatctggtttaaataattcagttgcagggataggggaagaattctttgtttatttgaatgacatg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13888414 |
aggttattgtgatggtgtaaagagtgttgtcaatggatctggtttaaataattcagttgcagggataagggaagaattctttgtttatttgaatgacatg |
13888315 |
T |
|
| Q |
101 |
tatcaatatccttctcctgttgaagaaggcatacttcaagtacagatcttaagagataatgactcctacagtgtttcgccgatcatatatcccatgttaa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13888314 |
tatcaatatccttctcccgttgaagaaggcatacttcaagtacagatcttaagagataatgactcctacagtgtttcgccgatcatatatcccatgttaa |
13888215 |
T |
|
| Q |
201 |
acaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgataattgtattttgcttgttataatacattggtattgatagta |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13888214 |
acaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgataattgtattttgcttgttataatacattggtattgatagta |
13888115 |
T |
|
| Q |
301 |
gggagta |
307 |
Q |
| |
|
||||||| |
|
|
| T |
13888114 |
gggagta |
13888108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 14028539 - 14028233
Alignment:
| Q |
1 |
aggttattgtgatggtgtaaagagtgttgtcaatggatctggtttaaataattcagttgcagggataggggaagaattctttgtttatttgaatgacatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
14028539 |
aggttattgtgatggtgtaaagagtgttgtcaatggatctggtttaaataattcagttgcagggataagggaagaattctttgtttatttgaatgacatg |
14028440 |
T |
|
| Q |
101 |
tatcaatatccttctcctgttgaagaaggcatacttcaagtacagatcttaagagataatgactcctacagtgtttcgccgatcatatatcccatgttaa |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14028439 |
tatcaatatccttctcccgttgaagaaggcatacttcaagtacagatcttaagagataatgactcctacagtgtttcgccgatcatatatcccatgttaa |
14028340 |
T |
|
| Q |
201 |
acaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgataattgtattttgcttgttataatacattggtattgatagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14028339 |
acaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgataattgtattttgcttgttataatacattggtattgatagta |
14028240 |
T |
|
| Q |
301 |
gggagta |
307 |
Q |
| |
|
||||||| |
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|
| T |
14028239 |
gggagta |
14028233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 7689277 - 7688969
Alignment:
| Q |
1 |
aggttattgtgatggtgtaaagagtgttgtcaatggatctggtttaaataattcagttgcagggataggggaagaattctttgtttatttgaatgacatg |
100 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||| |||||| | | | |||||| |||||||||||||||||| |
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|
| T |
7689277 |
aggttattgtgacggtgtaaaaagtgttgtcaatggatctggtttaaacgattcagttgttgggataagagcacaattctcggtttatttgaatgacatg |
7689178 |
T |
|
| Q |
101 |
tatcaatatccttctcctgttgaagaaggcatacttcaagtacagatcttaagagataatgactcctacagtgtttcgccgatcatatatcccatgttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7689177 |
tatcaatatccttctcctgttgaagaaggcatacttcaagtacaaatcttaagagatgatgactcctacagtgtttcgccgatcatatatcccatgttaa |
7689078 |
T |
|
| Q |
201 |
acaaaactggtattgcaaaggataaactcatttttattacattctcttctacatttgataattgtattttgcttgttata--atacattggtattgatag |
298 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
7689077 |
acaaaactggtatttcaaaggataaactctttttgattacattcctttctacatttgataattgtattttgcttgttataatatacattggtattgatat |
7688978 |
T |
|
| Q |
299 |
tagggagta |
307 |
Q |
| |
|
||||||||| |
|
|
| T |
7688977 |
tagggagta |
7688969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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