View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_21 (Length: 311)
Name: NF20250_low_21
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 36288859 - 36289143
Alignment:
| Q |
18 |
atatactacatcaccagaaaggatgtgtaaaggtataaacttgactgaatttgatcttatgatacccccaaaagggtaccctatttcatcctttaatctt |
117 |
Q |
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| T |
36288859 |
atatactacataaccagaaaggatgtgtaaaggtataaacttgactgaatttgatcttatgatacccccaaaagggtaccctatttcatcctttaatctt |
36288958 |
T |
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| Q |
118 |
tattctcatgaagcaaagttccttgctttaaaaagaaattttgaatttggaagtggagttcttttttatgataggctttttattggtttgagcttaagtg |
217 |
Q |
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| T |
36288959 |
tattctcatgaagcaaagttccttgctttaaaaagaaattttgaatttggaagtggagttattttttatgataggctttttattggtttgagcttaagtg |
36289058 |
T |
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| Q |
218 |
atgcaattgggttcaaagggtgtagagaaattgaagggccttatgttgattacttagaacaagagtttggtaagcctgttcttct |
302 |
Q |
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| T |
36289059 |
atgcaatttggttcaaagggtgtagagaaattgaagggtcttatgttgattacttagaacaagagtttggtaagcctgttcttct |
36289143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 36 - 302
Target Start/End: Complemental strand, 35036605 - 35036339
Alignment:
| Q |
36 |
aaggatgtgtaaaggtataaacttgactgaatttgatcttatgatacccccaaaagggtaccctatttcatcctttaatctttattctcatgaagcaaag |
135 |
Q |
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| T |
35036605 |
aaggatgtgtgaaagtataaacttgactgaatttgatcttatgaaacccccaaaagggtaccctaattcatcattcactctttattctcatgaagcaaag |
35036506 |
T |
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| Q |
136 |
ttccttgctttaaaaagaaattttgaatttggaagtggagttcttttttatgataggctttttattggtttgagcttaagtgatgcaattgggttcaaag |
235 |
Q |
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| T |
35036505 |
tatcttgctttaaaaagaaattttgaatttggaagtggggttcttttttatgataggctttttaatggtttgagcttaagtgatgcaattgggttcaaag |
35036406 |
T |
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| Q |
236 |
ggtgtagagaaattgaagggccttatgttgattacttagaacaagagtttggtaagcctgttcttct |
302 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35036405 |
ggtgtagacaaattgaagggccttatgttgattacttagaacaagaatttggtaagcctgttcttct |
35036339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 36 - 302
Target Start/End: Original strand, 35009328 - 35009594
Alignment:
| Q |
36 |
aaggatgtgtaaaggtataaacttgactgaatttgatcttatgatacccccaaaagggtaccctatttcatcctttaatctttattctcatgaagcaaag |
135 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35009328 |
aaggatgtgtgaaggtacaaacttgactgaatttgatcttatgaaacccccaaaagggtaccctatttcatcctttaatctttattatcatgaagcaaag |
35009427 |
T |
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| Q |
136 |
ttccttgctttaaaaagaaattttgaatttggaagtggagttcttttttatgataggctttttattggtttgagcttaagtgatgcaattgggttcaaag |
235 |
Q |
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|||||||||||||||||| || |||||||||||||| || |||| ||||||||| | | | |||||| |||||||||||||||||||||||||||| |
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| T |
35009428 |
caccttgctttaaaaagaaaattggaatttggaagtgggatttttttctatgataggatctattatggtttaagcttaagtgatgcaattgggttcaaag |
35009527 |
T |
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| Q |
236 |
ggtgtagagaaattgaagggccttatgttgattacttagaacaagagtttggtaagcctgttcttct |
302 |
Q |
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| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
35009528 |
gtattagagaaattgaagggccttatgttgattacttggaacaagagtttggtaaacctgttcttct |
35009594 |
T |
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