View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20250_low_25 (Length: 286)
Name: NF20250_low_25
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 46010013 - 46009831
Alignment:
| Q |
20 |
ctcatcacgtgaactaaatccccatgtgacaacctctgtttcatgtctccccgttgaaatcccactatcaccatcatc----atcaccaaaacgacgacg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
46010013 |
ctcatcacgtgaactaaatccccatgtgacaacctctgtttcatgtctccccgttgaaatcccactatcaccatcatcgatcatcaccaaaacgacgacg |
46009914 |
T |
|
| Q |
116 |
tcctttacgtacggacccacccccctttcactcacgtgccgccaaccataactgttaacgtttcattcaccaacatatccaac |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46009913 |
tcctttacgtacggacccacccccctttcactcacgtgccgccaaccataactgttaacgtttcattcaccaacatatccaac |
46009831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University