View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_26 (Length: 279)
Name: NF20250_low_26
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 3353222 - 3353462
Alignment:
| Q |
20 |
ttacaaacccgaaaatgcgacacaaatccggggaagtcgttgctttcagaggagctaagagttcaaggaagattagcttttccaatggtgttgatgaatt |
119 |
Q |
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| T |
3353222 |
ttacaaacccgaaaatgcgacataaatccggggaagtcgttgctttcagaggagctaagagttcaaggaagattagcttttccaatggtgttgatgaatt |
3353321 |
T |
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| Q |
120 |
tagcttggtttgccaagacagctatcacaacagcattcttgggtcgactaggtgagctcagcttagccggtggcgcactcgggttcactttcgctaacgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3353322 |
tagcttggtttgccaagacagctatcacaacagcattcttgggtagactaggtgagctcaggttagccggtggcgcactcgggttcactttcgctaacgt |
3353421 |
T |
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| Q |
220 |
taccggcttctctgtcttgaatggtctctgtggtgccatgg |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
3353422 |
taccggcttctctgtcttgaatggtctctgtggtgccatgg |
3353462 |
T |
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