View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_28 (Length: 272)
Name: NF20250_low_28
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_28 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 8327 - 8105
Alignment:
| Q |
16 |
caaatacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8327 |
caaatacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttacaaaa |
8228 |
T |
|
| Q |
116 |
gatgatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttctatgtatccaatccctgacgaggtatatatatgtttatatatgtgt--gt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8227 |
gatgatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttctatgtatccaatccctgacgaggtatatatatgtttatatatgtgtgtgt |
8128 |
T |
|
| Q |
214 |
gtatttacttttgtctttctgtg |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
8127 |
gtatttacttttgtctttctgtg |
8105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 411 - 592
Alignment:
| Q |
16 |
caaatacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaa |
115 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| | |||| |
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| T |
411 |
caaatacaaacatgggttttctgtggctgagatggagtcactcacaagcatatgtgaagtaatgttcccttcactgccaatggatgatgctctcacaaaa |
510 |
T |
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| Q |
116 |
gatgatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttctatgtatccaatccctgacgaggtatatatat |
197 |
Q |
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| T |
511 |
gatgatgaatcaagcaaggatgtgcaatctttcttcaacatctctgcttctaaatatccaatccctgacgaggtatatatat |
592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 31315370 - 31315592
Alignment:
| Q |
16 |
caaatacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31315370 |
caaatacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttacaaaa |
31315469 |
T |
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| Q |
116 |
gatgatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttctatgtatccaatccctgacgaggtatatatatgtttatata--tgtgtgt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31315470 |
gatgatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttctatgtatccaatccctgacgaggtatatatatgtttatatatgtgtgtgt |
31315569 |
T |
|
| Q |
214 |
gtatttacttttgtctttctgtg |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
31315570 |
gtatttacttttgtctttctgtg |
31315592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 31330499 - 31330680
Alignment:
| Q |
16 |
caaatacaaacatggattttctgtagctgagatggagtcactcacaagcatatgtgaagttgtgttgccttcattgccaatggatgatgctcttagaaaa |
115 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||| | |||| |
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| T |
31330499 |
caaatacaaacatgggttttctgtggctgagatggagtcactcacaagcatatgtgaagtaatgttcccttcactgccaatggatgatgctctcacaaaa |
31330598 |
T |
|
| Q |
116 |
gatgatgaatcaagcaaggatgtgcagtctttcttcaacatctctgcttctatgtatccaatccctgacgaggtatatatat |
197 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31330599 |
gatgatgaatcaagcaaggatgtgcaatctttcttcaacatctctgcttctaaatatccaatccctgacgaggtatatatat |
31330680 |
T |
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