View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_29 (Length: 256)
Name: NF20250_low_29
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15317306 - 15317062
Alignment:
| Q |
1 |
cacaacacaatgtt-attttggt--attttagaaaatttatattgtggataaaaagttgtggtttggcgacggacaagaattttaaattttgtccaatct |
97 |
Q |
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| T |
15317306 |
cacaacacaatgtttattttgattaattttaaaaaacttgtattgtggataaaa-gttgtggtttggcgacggacaagaattttaaattttgtccaatct |
15317208 |
T |
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| Q |
98 |
cttgtcccacaatttgtctagtcccatgagcagttctaaaatcaaacacaatataactagagttgtcctcttcagtctcttgtttattttttagcagatc |
197 |
Q |
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| T |
15317207 |
cttgtcccacgatttgtctagtcccatgagcagttctaaaatcaaacacaatataactagagttgtcctcttcattcccttatttattttttagcagatc |
15317108 |
T |
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| Q |
198 |
aaacgcattcgtatgctatctgataagcaaaataggtatttcattc |
243 |
Q |
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||| ||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
15317107 |
aaatgcactcgtatgctatctcataagcaaaataggtatttcattc |
15317062 |
T |
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Back To:
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 25395621 - 25395673
Alignment:
| Q |
4 |
aacacaatgttattttggtattttagaaaatttatattgtggataaaaagttg |
56 |
Q |
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| T |
25395621 |
aacaaaatgttattttggtattttagacaacttatatttaggataaaaagttg |
25395673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 49107330 - 49107375
Alignment:
| Q |
137 |
aatcaaacacaatataactagagttgtcctcttcagtctcttgttt |
182 |
Q |
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| T |
49107330 |
aatcaaacacaatataactaaagttgtcatgttcaatctcttgttt |
49107375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 17599010 - 17599136
Alignment:
| Q |
70 |
gacaagaattttaaattttgtccaatctcttgtcccacaatttgtctagtcccatgagcagttctaaaatcaaacacaatataactagagttgtcctctt |
169 |
Q |
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||||||||||| | |||||||| || ||| ||| ||||||| ||||||||| || ||||| |||||||||||||| || |||| ||||||| | | |
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| T |
17599010 |
gacaagaatttcagtttttgtccggtccctttccccccaatttgactagtcccaggaacagttttaaaatcaaacacactacaactgcagttgtcttgtc |
17599109 |
T |
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| Q |
170 |
cagtctcttgtttattttttagcagatcaaa |
200 |
Q |
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||||| | |||||||||||||||||||| |
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| T |
17599110 |
cagtccc----ttattttttagcagatcaaa |
17599136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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