View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_32 (Length: 248)
Name: NF20250_low_32
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_32 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 42014053 - 42014288
Alignment:
| Q |
14 |
aatatcacaaagcggtcgtatcatagtctctatagcacaggaacacagtctctcttcttccaacaacatcatcaaacccctcgaaacagtaacagnnnnn |
113 |
Q |
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| T |
42014053 |
aatatcacaaagcagtcatatcatagtctctatagcacaggaacacagtctctcttcttccaacaacatcatcaaacccctcgaaacagtaacagaaaaa |
42014152 |
T |
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| Q |
114 |
nn-cacacactcaacacactcactttcattcttcttcaccattttcactctcaaacaaacaatgatgggtaacaacaacagagaaagagaagaatcttta |
212 |
Q |
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| T |
42014153 |
acacacacactcaacacactcactttcattcttcttcaccattttcactctcaaacaaacaatgatgggtaacaacaacagagaaagagaagaatcttta |
42014252 |
T |
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| Q |
213 |
acattcacaatcccatcatcttcctctcattcctca |
248 |
Q |
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| T |
42014253 |
acattcacaatcccatcatcttcctctcattcctca |
42014288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 49 - 248
Target Start/End: Original strand, 1247317 - 1247516
Alignment:
| Q |
49 |
cacaggaacacagtctctcttcttccaacaacatcatcaaacccctcgaaacagtaacagnnnnnnncacacactcaacacactcactttcattcttctt |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
1247317 |
cacaggaacacagtctctcttcttccaacaacatcatcaaacccctcgaaacagtaacagaaaaaagcacacactcaacacactcattttcattcttctt |
1247416 |
T |
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| Q |
149 |
caccattttcactctcaaacaaacaatgatgggtaacaacaacagagaaagagaagaatctttaacattcacaatcccatcatcttcctctcattcctca |
248 |
Q |
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| T |
1247417 |
cgccattttcactctcaaacaaacaatgatgggtaacaacaacagagaaagagaagaacccttaacattcacaatcccatcatcttcctctcattcctca |
1247516 |
T |
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