View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_33 (Length: 248)
Name: NF20250_low_33
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 42014288 - 42014053
Alignment:
| Q |
1 |
tgaggaatgagaggaagatgatgggattgtgaatgttaaagattcttctctttctctgttgttgttacccatcattgtttgtttgagagtgaaaatggtg |
100 |
Q |
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| T |
42014288 |
tgaggaatgagaggaagatgatgggattgtgaatgttaaagattcttctctttctctgttgttgttacccatcattgtttgtttgagagtgaaaatggtg |
42014189 |
T |
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| Q |
101 |
aagaagaatgaaagtgagtgtgttgagtgtgtg-nnnnnnnctgttactgtttcgaggggtttgatgatgttgttggaagaagagagactgtgttcctgt |
199 |
Q |
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| T |
42014188 |
aagaagaatgaaagtgagtgtgttgagtgtgtgtgttttttctgttactgtttcgaggggtttgatgatgttgttggaagaagagagactgtgttcctgt |
42014089 |
T |
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| Q |
200 |
gctatagagactatgatacgaccgctttgtgatatt |
235 |
Q |
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| T |
42014088 |
gctatagagactatgatatgactgctttgtgatatt |
42014053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 1247516 - 1247317
Alignment:
| Q |
1 |
tgaggaatgagaggaagatgatgggattgtgaatgttaaagattcttctctttctctgttgttgttacccatcattgtttgtttgagagtgaaaatggtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1247516 |
tgaggaatgagaggaagatgatgggattgtgaatgttaagggttcttctctttctctgttgttgttacccatcattgtttgtttgagagtgaaaatggcg |
1247417 |
T |
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| Q |
101 |
aagaagaatgaaagtgagtgtgttgagtgtgtgnnnnnnnctgttactgtttcgaggggtttgatgatgttgttggaagaagagagactgtgttcctgtg |
200 |
Q |
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| T |
1247416 |
aagaagaatgaaaatgagtgtgttgagtgtgtgcttttttctgttactgtttcgaggggtttgatgatgttgttggaagaagagagactgtgttcctgtg |
1247317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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