View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_34 (Length: 246)
Name: NF20250_low_34
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 41646430 - 41646633
Alignment:
| Q |
1 |
atctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggttannnnnnnataatgatatttttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41646430 |
atctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggttatttttttataatgatatttttt |
41646529 |
T |
|
| Q |
101 |
gagtaacaaataatgctactttgttcgtctcaaagtggatgcctttataagattaataatgctcacatcttataaaaatgattagtcatacaacttttca |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41646530 |
gagtaacaaataatgctactttgttcgtctcatagtgcatgcctttataagattaataatgctcgcatcttataaaaatgattagtcatacaacttttca |
41646629 |
T |
|
| Q |
201 |
atgg |
204 |
Q |
| |
|
|||| |
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|
| T |
41646630 |
atgg |
41646633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 41653632 - 41653729
Alignment:
| Q |
1 |
atctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggttannnnnnnataatgatatttttt |
100 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41653632 |
atctcaaacatgatg---cttctaatcctgatggatttcatttgacaatcaacaacattaaagccgttattcaggttatttttttataatgatatttttt |
41653728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 2432459 - 2432524
Alignment:
| Q |
13 |
atggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggtta |
78 |
Q |
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|
| T |
2432459 |
atggctcttccaaccctgatggatttcatttgacaatcaacaacattaaagctgttattcaggtta |
2432524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 5023028 - 5022951
Alignment:
| Q |
1 |
atctcaaacatgatggctcttctaatccggatggatttcatttgacaatcaacaacattaaagccgttattcaggtta |
78 |
Q |
| |
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|||||||| | ||||||||| |||| ||| |||||||||||||||||||||||| ||||||||| |||| ||||||| |
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| T |
5023028 |
atctcaaagacgatggctctcctaacccgattggatttcatttgacaatcaacaatattaaagccattatccaggtta |
5022951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 12439010 - 12438962
Alignment:
| Q |
30 |
gatggatttcatttgacaatcaacaacattaaagccgttattcaggtta |
78 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
12439010 |
gatggatttcatttgacaaccaacaacattaaagctgttattcaggtta |
12438962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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