View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20250_low_38 (Length: 234)
Name: NF20250_low_38
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_38 |
 |  |
|
| [»] scaffold0217 (1 HSPs) |
 |  |  |
|
| [»] scaffold0175 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 3570043 - 3570262
Alignment:
| Q |
1 |
tataaggaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3570043 |
tataatgaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccc |
3570142 |
T |
 |
| Q |
101 |
agtacattttggatcattttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttggga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3570143 |
agtacattttggatcattttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttggga |
3570242 |
T |
 |
| Q |
201 |
ggtatggaatgaaaggaact |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3570243 |
ggtatggaatgaaaggaact |
3570262 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 21479583 - 21479510
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| |||| || |||||||||||||||||||||| |
|
|
| T |
21479583 |
attcattgtcctatttttggttctctttggcaacacgtgaaaaattggcttggtgtgtattttgtggatcccca |
21479510 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 36189038 - 36188905
Alignment:
| Q |
1 |
tataaggaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccc |
100 |
Q |
| |
|
||||| ||||| ||| ||||||||||||| || ||||||| ||| |||||||||||||||||||| ||||||||| || ||| ||| ||||||||| |
|
|
| T |
36189038 |
tataatgaatcggcagatcatcttttaatccaatgtcctattttcggttctctttggcaacatgtcaaggcttggattgacgtgcattcaatggatcccc |
36188939 |
T |
 |
| Q |
101 |
agtacattttggatcattttacacaatttgctta |
134 |
Q |
| |
|
| | ||||| |||||||||| ||||||||||| |
|
|
| T |
36188938 |
atcatattttcaatcattttactcaatttgctta |
36188905 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 13841161 - 13841060
Alignment:
| Q |
7 |
gaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtaca |
106 |
Q |
| |
|
||||||||| |||| || |||| |||||||||| ||||||||||||||| ||||||| ||| ||||| || ||||||||||||||||||| | |||| |
|
|
| T |
13841161 |
gaatcagcaaatcacctcataatacattgtcctatctttggttctctttggaaacatgtaaagacttggcttgctgtgtattttgtggatcccaaataca |
13841062 |
T |
 |
| Q |
107 |
tt |
108 |
Q |
| |
|
|| |
|
|
| T |
13841061 |
tt |
13841060 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 14545142 - 14545340
Alignment:
| Q |
17 |
atcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatca |
116 |
Q |
| |
|
|||| ||||| ||||||||||||| |||||| |||| ||||||||||| ||||| ||| || || | |||| ||||| |||| | ||| ||||||| |
|
|
| T |
14545142 |
atcaccttttcattcattgtcctatttttggagctctctggcaacatgtcaaggcgtggattgatgcgcatttggtggactcccaacatattatggatca |
14545241 |
T |
 |
| Q |
117 |
ttttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttgggaggtatggaatgaaagg |
216 |
Q |
| |
|
|||||| || ||||||||| || |||| |||||| | || || |||||||||||| ||| ||||| | || |||||||| | |||||||||||||| |
|
|
| T |
14545242 |
ttttactcagtttgcttac---tctggtggctttaaatctcgtcgatcttttttgcaacttacatggctttgcactgtttgggtgttatggaatgaaagg |
14545338 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 10462211 - 10462268
Alignment:
| Q |
11 |
cagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaa |
68 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10462211 |
cagcataacatttattaatacattgtcctacttttggttctctttggtaacatgtgaa |
10462268 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 18670401 - 18670573
Alignment:
| Q |
2 |
ataaggaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||| ||||| || ||||||| || |||||| || |
|
|
| T |
18670401 |
ataatgaatcagcatatcatcttttaattcgttgtcatacctttggttctctttggcaacatgtaaagccttggattggtgtgtacttcttggatctccg |
18670500 |
T |
 |
| Q |
102 |
gtacattttggatcattttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttgcaa |
174 |
Q |
| |
|
||| || ||||||||||||||| ||| ||||| | || |||| |||||||||||| ||||||||||||||| |
|
|
| T |
18670501 |
acacacttaggatcattttacacagttttcttactcgtcgggtggttttaaaccgcgacgttcttttttgcaa |
18670573 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 23290272 - 23290199
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| || |||| || ||||||||||||||||| |||| |
|
|
| T |
23290272 |
attcattgtcctaattttggttctctttggcaacatgttaaaaattggcttggtgtgtattttgtggattccca |
23290199 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 32171267 - 32171195
Alignment:
| Q |
26 |
taattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcc |
98 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| |||||| ||||| | ||||||||| |||||||| |
|
|
| T |
32171267 |
taatacattgtcctacttttggttccctttggcaacttgtgaaatcttggctaggtgtgtattcagtggatcc |
32171195 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 17927335 - 17927218
Alignment:
| Q |
17 |
atcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatca |
116 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||| |||||||| ||||| || ||||| || || || |||||||||| | || | ||||||||||| |
|
|
| T |
17927335 |
atcatctcttaattcattgtcctattttcggtgtgctttggcatcatgtcaaaacttggattggtttgaattttgtggaacaccgacatattttggatca |
17927236 |
T |
 |
| Q |
117 |
ttttacacaatttgctta |
134 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
17927235 |
ttttactcagtttgctta |
17927218 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 29871059 - 29871022
Alignment:
| Q |
7 |
gaatcagcatatcatcttttaattcattgtcctacttt |
44 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||| |
|
|
| T |
29871059 |
gaatcaacacatcatcttttaattcattgtcctacttt |
29871022 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 33068190 - 33068100
Alignment:
| Q |
81 |
tgtgtattttgtggatccccagtacattttggatcattttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttg |
171 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||||| |
|
|
| T |
33068190 |
tgtgtactttgtggatccccaacacattttggatcattttacacaatttgcttattcttcaggtggttttaaaccgtgacgttcttttttg |
33068100 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 33069257 - 33069194
Alignment:
| Q |
2 |
ataaggaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgt |
65 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
33069257 |
ataatgaatcggcagatcatcttttaattcattgtcatacctttggttctctttggcaacatgt |
33069194 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 12230693 - 12230607
Alignment:
| Q |
11 |
cagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatc |
97 |
Q |
| |
|
||||||| ||||| ||||| |||| | ||||||||||||||||||||||||| ||||| ||| || ||||||||| |||||||| |
|
|
| T |
12230693 |
cagcataacatctattaatacattattctacttttggttctctttggcaacacttgaagagctggtttggtgtgtattatgtggatc |
12230607 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 27017211 - 27017284
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| |||| || ||||||||| |||||||||||| |
|
|
| T |
27017211 |
attcattgtcctacttttggctctctttggcaatctgtgaagaattggattggtgtgtattctgtggatcccca |
27017284 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 38707501 - 38707428
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||| |||| || |||||| || |||||||||||| |
|
|
| T |
38707501 |
attcattgtcctacttttggctctctttggcaactggtgaagaattggattggtgtgttttctgtggatcccca |
38707428 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 8606645 - 8606718
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||| ||| || ||||||| | |||||||||||| |
|
|
| T |
8606645 |
attcattgtcttacttttgattctctttggcaacatgtgaagaaatggattggtgtgtactatgtggatcccca |
8606718 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 28741116 - 28741248
Alignment:
| Q |
2 |
ataaggaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
|||| ||||||||| |||||||| |||| ||||||||| |||||| ||||||| |||| |||||||| | | | ||||| ||||| |||||||| |
|
|
| T |
28741116 |
ataatgaatcagcagatcatcttataatccattgtcctgtatttggtactctttgacaacttgtgaaggagttgataagtgtttatttagtggatccgtt |
28741215 |
T |
 |
| Q |
102 |
gtacattttggatcattttacacaatttgctta |
134 |
Q |
| |
|
||| |||||||| || || || ||||||||||| |
|
|
| T |
28741216 |
gtatattttggaccacttcacccaatttgctta |
28741248 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 22559995 - 22560068
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||||||||||| ||| || ||||||||| |||||||||||| |
|
|
| T |
22559995 |
attcattatcctattttttgttctctttggcaacatgtgaagaaatggattggtgtgtattctgtggatcccca |
22560068 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 50092653 - 50092544
Alignment:
| Q |
19 |
catcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatcatt |
118 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||| ||| ||||||| ||||| | |||||||||||||||| || || | || ||||| |||| |
|
|
| T |
50092653 |
catcttattattcattgttctacttttggttctctttgcgaacttgtgaagacttggataggtgtgtattttgtggaccctcaacatatcttggagcatt |
50092554 |
T |
 |
| Q |
119 |
ttacacaatt |
128 |
Q |
| |
|
|||| ||||| |
|
|
| T |
50092553 |
ttactcaatt |
50092544 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 39416120 - 39416054
Alignment:
| Q |
32 |
attgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcc |
98 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| ||||| | ||||||||| |||||||| |
|
|
| T |
39416120 |
attgtcctacttttggttcactttggcaactagtgaagtcttggttaggtgtgtattcagtggatcc |
39416054 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 39496067 - 39496029
Alignment:
| Q |
31 |
cattgtcctacttttggttctctttggcaacatgtgaag |
69 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
39496067 |
cattgtcctatttttggttctctttggcaacttgtgaag |
39496029 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 6632968 - 6632895
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| ||||| ||| || |||||||||||| |||||||| |
|
|
| T |
6632968 |
attcattctcctactttcggttctctttggcaacacgtgaaaaaatggcttggtgtgtattttgcagatcccca |
6632895 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 29000627 - 29000535
Alignment:
| Q |
7 |
gaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccc |
99 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||| || ||||||||||| ||| |||| || ||||| |||| ||||||||| |
|
|
| T |
29000627 |
gaatcaacatatcatctcttaattcattgtcctactttcggtgagctatggcaacatgtcaagacttgaattggtgtgcatttggtggatccc |
29000535 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 26376388 - 26376425
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgt |
65 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
26376388 |
attcattgtcctaattttggttctctttgacaacatgt |
26376425 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 14608637 - 14608701
Alignment:
| Q |
31 |
cattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtgga |
95 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| |||||| ||||| | |||||||||||||||| |
|
|
| T |
14608637 |
cattgttcaacttttggttctgtttggcaactcgtgaagacttggataggtgtgtattttgtgga |
14608701 |
T |
 |
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Target: scaffold0217 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 8008 - 8081
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||| |||| | ||||||||| | |||||||||| |
|
|
| T |
8008 |
attcattatcctacttttggttctctttggcaatctgtgaagaattggactggtgtgtattctatggatcccca |
8081 |
T |
 |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 19617034 - 19617107
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca |
101 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| ||| || ||||||| |||||||| ||||| |
|
|
| T |
19617034 |
attcattgtcccatttttggttctctttggcaacatgtgaacaactggattggtgtgtactttgtggaacccca |
19617107 |
T |
 |
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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 12954077 - 12954194
Alignment:
| Q |
17 |
atcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatca |
116 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||| |||| ||| ||||| || ||||| || || || |||||||||| | ||| | ||||||||||| |
|
|
| T |
12954077 |
atcatctcttaatttattgtcctactttcggtgtgcttttgcatcatgtcaaaacttggattggtttgaattttgtggaacaccaacatattttggatca |
12954176 |
T |
 |
| Q |
117 |
ttttacacaatttgctta |
134 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
12954177 |
ttttactcagtttgctta |
12954194 |
T |
 |
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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 32797382 - 32797431
Alignment:
| Q |
17 |
atcatcttttaattcattgtcctacttttggttctctttggcaacatgtg |
66 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
32797382 |
atcatcttctaattcattgtcctatttttggtagtctttggcaacttgtg |
32797431 |
T |
 |
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Target: scaffold0175 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 19447 - 19487
Alignment:
| Q |
28 |
attcattgtcctacttttggttctctttggcaacatgtgaa |
68 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
19447 |
attcattgtcctatttttggttctctttggcaacacgtgaa |
19487 |
T |
 |
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