View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20250_low_38 (Length: 234)

Name: NF20250_low_38
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20250_low_38
NF20250_low_38
[»] chr4 (6 HSPs)
chr4 (1-220)||(3570043-3570262)
chr4 (28-101)||(21479510-21479583)
chr4 (1-134)||(36188905-36189038)
chr4 (7-108)||(13841060-13841161)
chr4 (17-218)||(14545142-14545340)
chr4 (11-68)||(10462211-10462268)
[»] chr2 (5 HSPs)
chr2 (2-174)||(18670401-18670573)
chr2 (28-101)||(23290199-23290272)
chr2 (26-98)||(32171195-32171267)
chr2 (17-134)||(17927218-17927335)
chr2 (7-44)||(29871022-29871059)
[»] chr8 (3 HSPs)
chr8 (81-171)||(33068100-33068190)
chr8 (2-65)||(33069194-33069257)
chr8 (11-97)||(12230607-12230693)
[»] chr5 (2 HSPs)
chr5 (28-101)||(27017211-27017284)
chr5 (28-101)||(38707428-38707501)
[»] chr7 (2 HSPs)
chr7 (28-101)||(8606645-8606718)
chr7 (2-134)||(28741116-28741248)
[»] chr1 (5 HSPs)
chr1 (28-101)||(22559995-22560068)
chr1 (19-128)||(50092544-50092653)
chr1 (32-98)||(39416054-39416120)
chr1 (31-69)||(39496029-39496067)
chr1 (28-101)||(6632895-6632968)
[»] chr3 (3 HSPs)
chr3 (7-99)||(29000535-29000627)
chr3 (28-65)||(26376388-26376425)
chr3 (31-95)||(14608637-14608701)
[»] scaffold0217 (1 HSPs)
scaffold0217 (28-101)||(8008-8081)
[»] chr6 (3 HSPs)
chr6 (28-101)||(19617034-19617107)
chr6 (17-134)||(12954077-12954194)
chr6 (17-66)||(32797382-32797431)
[»] scaffold0175 (1 HSPs)
scaffold0175 (28-68)||(19447-19487)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 3570043 - 3570262
Alignment:
1 tataaggaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3570043 tataatgaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccc 3570142  T
101 agtacattttggatcattttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttggga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3570143 agtacattttggatcattttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttggga 3570242  T
201 ggtatggaatgaaaggaact 220  Q
    ||||||||||||||||||||    
3570243 ggtatggaatgaaaggaact 3570262  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 21479583 - 21479510
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    ||||||||||||| ||||||||||||||||||||| |||||   |||| || ||||||||||||||||||||||    
21479583 attcattgtcctatttttggttctctttggcaacacgtgaaaaattggcttggtgtgtattttgtggatcccca 21479510  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 36189038 - 36188905
Alignment:
1 tataaggaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccc 100  Q
    ||||| ||||| ||| ||||||||||||| || ||||||| ||| |||||||||||||||||||| ||||||||| ||   ||| |||   |||||||||    
36189038 tataatgaatcggcagatcatcttttaatccaatgtcctattttcggttctctttggcaacatgtcaaggcttggattgacgtgcattcaatggatcccc 36188939  T
101 agtacattttggatcattttacacaatttgctta 134  Q
    |  | |||||  |||||||||| |||||||||||    
36188938 atcatattttcaatcattttactcaatttgctta 36188905  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 13841161 - 13841060
Alignment:
7 gaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtaca 106  Q
    ||||||||| |||| ||  |||| ||||||||||  ||||||||||||||| ||||||| ||| ||||| ||  ||||||||||||||||||| | ||||    
13841161 gaatcagcaaatcacctcataatacattgtcctatctttggttctctttggaaacatgtaaagacttggcttgctgtgtattttgtggatcccaaataca 13841062  T
107 tt 108  Q
    ||    
13841061 tt 13841060  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 14545142 - 14545340
Alignment:
17 atcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatca 116  Q
    |||| ||||| ||||||||||||| ||||||  |||| ||||||||||| ||||| ||| ||  || | |||| |||||  ||||  | ||| |||||||    
14545142 atcaccttttcattcattgtcctatttttggagctctctggcaacatgtcaaggcgtggattgatgcgcatttggtggactcccaacatattatggatca 14545241  T
117 ttttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttgcaatttaattggctattcagtgtttgggaggtatggaatgaaagg 216  Q
    |||||| || |||||||||   || ||||  |||||| | || || |||||||||||| |||  ||||| | || |||||||| | ||||||||||||||    
14545242 ttttactcagtttgcttac---tctggtggctttaaatctcgtcgatcttttttgcaacttacatggctttgcactgtttgggtgttatggaatgaaagg 14545338  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 10462211 - 10462268
Alignment:
11 cagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaa 68  Q
    ||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||||||||    
10462211 cagcataacatttattaatacattgtcctacttttggttctctttggtaacatgtgaa 10462268  T

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Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 18670401 - 18670573
Alignment:
2 ataaggaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    |||| ||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||| ||||| || ||||||| ||  |||||| ||     
18670401 ataatgaatcagcatatcatcttttaattcgttgtcatacctttggttctctttggcaacatgtaaagccttggattggtgtgtacttcttggatctccg 18670500  T
102 gtacattttggatcattttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttgcaa 174  Q
      ||| || ||||||||||||||| ||| ||||| | || |||| |||||||||||| |||||||||||||||    
18670501 acacacttaggatcattttacacagttttcttactcgtcgggtggttttaaaccgcgacgttcttttttgcaa 18670573  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 23290272 - 23290199
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    ||||||||||||| |||||||||||||||||||||||| ||   |||| || ||||||||||||||||| ||||    
23290272 attcattgtcctaattttggttctctttggcaacatgttaaaaattggcttggtgtgtattttgtggattccca 23290199  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 32171267 - 32171195
Alignment:
26 taattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcc 98  Q
    |||| |||||||||||||||||||| |||||||||| ||||||  ||||| |  |||||||||  ||||||||    
32171267 taatacattgtcctacttttggttccctttggcaacttgtgaaatcttggctaggtgtgtattcagtggatcc 32171195  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 17927335 - 17927218
Alignment:
17 atcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatca 116  Q
    ||||||| |||||||||||||||| ||| |||   |||||||| ||||| ||  ||||| || || || |||||||||| | ||   | |||||||||||    
17927335 atcatctcttaattcattgtcctattttcggtgtgctttggcatcatgtcaaaacttggattggtttgaattttgtggaacaccgacatattttggatca 17927236  T
117 ttttacacaatttgctta 134  Q
    |||||| || ||||||||    
17927235 ttttactcagtttgctta 17927218  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 29871059 - 29871022
Alignment:
7 gaatcagcatatcatcttttaattcattgtcctacttt 44  Q
    |||||| || ||||||||||||||||||||||||||||    
29871059 gaatcaacacatcatcttttaattcattgtcctacttt 29871022  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 171
Target Start/End: Complemental strand, 33068190 - 33068100
Alignment:
81 tgtgtattttgtggatccccagtacattttggatcattttacacaatttgcttacacttcaggtgattttaaaccgcggcgttcttttttg 171  Q
    |||||| ||||||||||||||  |||||||||||||||||||||||||||||||  ||||||||| |||||||||| | ||||||||||||    
33068190 tgtgtactttgtggatccccaacacattttggatcattttacacaatttgcttattcttcaggtggttttaaaccgtgacgttcttttttg 33068100  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 33069257 - 33069194
Alignment:
2 ataaggaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgt 65  Q
    |||| ||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||||||    
33069257 ataatgaatcggcagatcatcttttaattcattgtcatacctttggttctctttggcaacatgt 33069194  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 12230693 - 12230607
Alignment:
11 cagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatc 97  Q
    ||||||| ||||| ||||| |||| | |||||||||||||||||||||||||  |||||   ||| || ||||||||| ||||||||    
12230693 cagcataacatctattaatacattattctacttttggttctctttggcaacacttgaagagctggtttggtgtgtattatgtggatc 12230607  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 27017211 - 27017284
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    |||||||||||||||||||| ||||||||||||  |||||||  |||| || ||||||||| ||||||||||||    
27017211 attcattgtcctacttttggctctctttggcaatctgtgaagaattggattggtgtgtattctgtggatcccca 27017284  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 38707501 - 38707428
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    |||||||||||||||||||| |||||||||||||  ||||||  |||| || |||||| || ||||||||||||    
38707501 attcattgtcctacttttggctctctttggcaactggtgaagaattggattggtgtgttttctgtggatcccca 38707428  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 8606645 - 8606718
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    |||||||||| |||||||| ||||||||||||||||||||||   ||| || ||||||| | ||||||||||||    
8606645 attcattgtcttacttttgattctctttggcaacatgtgaagaaatggattggtgtgtactatgtggatcccca 8606718  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 134
Target Start/End: Original strand, 28741116 - 28741248
Alignment:
2 ataaggaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    |||| ||||||||| |||||||| |||| |||||||||   |||||| ||||||| |||| ||||||||  | | | ||||| ||||| ||||||||       
28741116 ataatgaatcagcagatcatcttataatccattgtcctgtatttggtactctttgacaacttgtgaaggagttgataagtgtttatttagtggatccgtt 28741215  T
102 gtacattttggatcattttacacaatttgctta 134  Q
    ||| |||||||| || || || |||||||||||    
28741216 gtatattttggaccacttcacccaatttgctta 28741248  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 22559995 - 22560068
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    ||||||| ||||| |||| |||||||||||||||||||||||   ||| || ||||||||| ||||||||||||    
22559995 attcattatcctattttttgttctctttggcaacatgtgaagaaatggattggtgtgtattctgtggatcccca 22560068  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 50092653 - 50092544
Alignment:
19 catcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatcatt 118  Q
    |||||| | ||||||||| |||||||||||||||||||  ||| ||||||| ||||| |  |||||||||||||||| || ||  | || ||||| ||||    
50092653 catcttattattcattgttctacttttggttctctttgcgaacttgtgaagacttggataggtgtgtattttgtggaccctcaacatatcttggagcatt 50092554  T
119 ttacacaatt 128  Q
    |||| |||||    
50092553 ttactcaatt 50092544  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 39416120 - 39416054
Alignment:
32 attgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcc 98  Q
    ||||||||||||||||||| ||||||||||  |||||| ||||| |  |||||||||  ||||||||    
39416120 attgtcctacttttggttcactttggcaactagtgaagtcttggttaggtgtgtattcagtggatcc 39416054  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 39496067 - 39496029
Alignment:
31 cattgtcctacttttggttctctttggcaacatgtgaag 69  Q
    |||||||||| |||||||||||||||||||| |||||||    
39496067 cattgtcctatttttggttctctttggcaacttgtgaag 39496029  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 6632968 - 6632895
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    ||||||| ||||||||| ||||||||||||||||| |||||    ||| || ||||||||||||  ||||||||    
6632968 attcattctcctactttcggttctctttggcaacacgtgaaaaaatggcttggtgtgtattttgcagatcccca 6632895  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 29000627 - 29000535
Alignment:
7 gaatcagcatatcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccc 99  Q
    |||||| |||||||||| |||||||||||||||||||| |||   || ||||||||||| ||| ||||  || ||||| |||| |||||||||    
29000627 gaatcaacatatcatctcttaattcattgtcctactttcggtgagctatggcaacatgtcaagacttgaattggtgtgcatttggtggatccc 29000535  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 26376388 - 26376425
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgt 65  Q
    ||||||||||||| ||||||||||||||| ||||||||    
26376388 attcattgtcctaattttggttctctttgacaacatgt 26376425  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Original strand, 14608637 - 14608701
Alignment:
31 cattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtgga 95  Q
    |||||| | |||||||||||| |||||||||  |||||| ||||| |  ||||||||||||||||    
14608637 cattgttcaacttttggttctgtttggcaactcgtgaagacttggataggtgtgtattttgtgga 14608701  T

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Target: scaffold0217 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 8008 - 8081
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    ||||||| |||||||||||||||||||||||||  |||||||  ||||  | ||||||||| | ||||||||||    
8008 attcattatcctacttttggttctctttggcaatctgtgaagaattggactggtgtgtattctatggatcccca 8081  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 19617034 - 19617107
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatcccca 101  Q
    ||||||||||| | |||||||||||||||||||||||||||    ||| || ||||||| |||||||| |||||    
19617034 attcattgtcccatttttggttctctttggcaacatgtgaacaactggattggtgtgtactttgtggaacccca 19617107  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 12954077 - 12954194
Alignment:
17 atcatcttttaattcattgtcctacttttggttctctttggcaacatgtgaaggcttgggttagtgtgtattttgtggatccccagtacattttggatca 116  Q
    ||||||| |||||| ||||||||||||| |||   |||| ||| ||||| ||  ||||| || || || |||||||||| | |||  | |||||||||||    
12954077 atcatctcttaatttattgtcctactttcggtgtgcttttgcatcatgtcaaaacttggattggtttgaattttgtggaacaccaacatattttggatca 12954176  T
117 ttttacacaatttgctta 134  Q
    |||||| || ||||||||    
12954177 ttttactcagtttgctta 12954194  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 32797382 - 32797431
Alignment:
17 atcatcttttaattcattgtcctacttttggttctctttggcaacatgtg 66  Q
    |||||||| ||||||||||||||| |||||||  ||||||||||| ||||    
32797382 atcatcttctaattcattgtcctatttttggtagtctttggcaacttgtg 32797431  T

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Target: scaffold0175 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 19447 - 19487
Alignment:
28 attcattgtcctacttttggttctctttggcaacatgtgaa 68  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
19447 attcattgtcctatttttggttctctttggcaacacgtgaa 19487  T

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