View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20250_low_39 (Length: 232)
Name: NF20250_low_39
Description: NF20250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20250_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4265581 - 4265801
Alignment:
| Q |
1 |
cactttccattgcactttcttacttttatcctcttttgggtcatctcacttggcctaatgattctcacaagccaatcatcaaattcattaagggaaacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
4265581 |
cactttccattgcactttcttacttttatcctcttttgggtcatctcacttggcctaatgattctcacaagccaatcatcaaattcatcaagggaaaccc |
4265680 |
T |
|
| Q |
101 |
tctttcacttaccatagctgaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265681 |
tctttcacttaccatagctgaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttg |
4265780 |
T |
|
| Q |
201 |
aatatttctcatgatcaagct |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
4265781 |
aatatttctcatgatcaagct |
4265801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4260035 - 4260255
Alignment:
| Q |
1 |
cactttccattgcactttcttacttttatcctcttttgggtcatctcacttggcctaatgattctcacaagccaatcatcaaattcattaagggaaacac |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||| || |||||||| |
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| T |
4260035 |
cactttccattgcactttctcacttttatcctcttttgggtcatctcatttggcctcatgattctcacaagccaatcattaaattcatcaaaggaaacac |
4260134 |
T |
|
| Q |
101 |
tctttcacttaccatagctgaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttg |
200 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||| | || |||||||||||| ||||||||| ||| ||||||||| |||||||||||||| |
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| T |
4260135 |
tctttcacttaccgtagctgaatctcatgctgatttcaatcatttctctggtaagaatctttctgaagctacacagattcatgattttttacctaacttg |
4260234 |
T |
|
| Q |
201 |
aatatttctcatgatcaagct |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4260235 |
aatatttctcatgatcaagct |
4260255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 4298707 - 4298506
Alignment:
| Q |
20 |
ttacttttatcctcttttgggtcatctcacttggcctaatgattctcacaagccaatcatcaaattcattaagggaaacactctttcacttaccatagct |
119 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||| |
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| T |
4298707 |
ttacttttatcctcttttgggtcatctcacttggcctaatgattctcacaaaccaatcatcaaattcttcaagagaaacactctttcacttaccatagct |
4298608 |
T |
|
| Q |
120 |
gaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
219 |
Q |
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||||||||| ||||||||||| |||| || |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298607 |
gaatctgattctgatttcaattatctatctggtaagaatccttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
4298508 |
T |
|
| Q |
220 |
ct |
221 |
Q |
| |
|
|| |
|
|
| T |
4298507 |
ct |
4298506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 4290130 - 4289922
Alignment:
| Q |
13 |
cactttcttacttttatcctcttttgggtcatctcacttggcctaatgattctcacaagccaatcatcaaattcattaagggaaacactctttcacttac |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||||| |
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| T |
4290130 |
cactttctcacttttatcctcttttgggtcatctcatttggcctaatgattctcacaaaccaatcattaaattcataagaggaaacactctttcacttac |
4290031 |
T |
|
| Q |
113 |
catagctgaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatttctcat |
212 |
Q |
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||||||||||||| ||||||||||||||||| | || |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4290030 |
catagctgaatctcatgctgatttcaatcatttatctggtaagaatctttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcat |
4289931 |
T |
|
| Q |
213 |
gatcaagct |
221 |
Q |
| |
|
||||||||| |
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|
| T |
4289930 |
gatcaagct |
4289922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 4285293 - 4285192
Alignment:
| Q |
120 |
gaatctgatgctgatttcaatcatctttcaggtaagaatcttactgaagctaaacaaattcatgatcttttacctaacttgaatatttctcatgatcaag |
219 |
Q |
| |
|
|||||| |||||| |||||||||| | || | |||||||||| | ||||| | |||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
4285293 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
4285194 |
T |
|
| Q |
220 |
ct |
221 |
Q |
| |
|
|| |
|
|
| T |
4285193 |
ct |
4285192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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